PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN09719.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 435aa    MW: 48269.3 Da    PI: 6.5108
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN09719.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.31e-11251293754
                 HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
         HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                 ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A+eY+k+L
  KHN09719.1 251 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 293
                 79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.764244293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.19E-16247312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-9250293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-14250299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.0E-16251306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.22E-12251297No hitNo description
CDDcd048735.16E-7364424No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MMSRINNNGV AWMGEREDEN SRNHNIIPTD TTTTNTGFVE TTNNDLGSLC AFKPMLDVDD  60
EWYNNITNHH HHHHHHHDMT FLPPAATAVD SSSSCSPYFF PPNPKPPFLV NPFDMGFLDP  120
QASSSPSLPL LPESTHFTPP HTTTTAFAGF QSRLQESGSS KSLFLRPLES LPPSDKKKRK  180
EKEKDEEVED LSFDGSGLNY DSDDLTESNY NNVSEGNTGK NGGVSSNANS TVITGLDQKG  240
KKKGMPAKNL MAERRRRKKL NDRLYMLRSV VPKISKMDRA SILGDAIEYL KELLQRINDL  300
HNELESTPVG SSLTPVSSFH PLTPTPPTLP SRIKEELCPS SLPSPNGQPA RVEVRLREGR  360
AVNIHMFCAR KPGLLLSTMR ALDNLGLDIQ QAVISCFNGF AMDIFRAEQC KEGQDVHPEQ  420
IKAVLLDSAG YNGMM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1240258KKKGMPAKNLMAERRRRKK
2252259ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM9899280.0HM989928.1 Glycine max ICEd mRNA, complete cds.
GenBankFJ3932260.0FJ393226.1 Glycine max inducer of CBF expression 4 (ICE4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001238707.10.0inducer of CBF expression 4
SwissprotQ9LSE21e-117ICE1_ARATH; Transcription factor ICE1
TrEMBLA0A0B2PPW20.0A0A0B2PPW2_GLYSO; Transcription factor ICE1
STRINGGLYMA06G17330.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24143482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-110bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]