PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN08270.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family YABBY
Protein Properties Length: 215aa    MW: 24177.3 Da    PI: 6.0808
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN08270.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY193.88e-6061632166
       YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnvekeesastsv 96 
                 ++f+ +eq+Cy+qC+fC+til+vsvP +sl++vvtvrCGhCtsl+svn++kas    +lla+ shl+ +   + ++ +k+ +++  s+++ +++++++v
  KHN08270.1   6 HLFDLPEQICYIQCGFCSTILMVSVPCSSLSMVVTVRCGHCTSLFSVNMSKASfipfHLLASLSHLEPKESSPEADANKTLNSHSASMMTYSDCEEEDV 104
                 7899***********************************************998898999999997766555555555555555444444444443333 PP

       YABBY  97 sseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPki 166
                             +++ + v++PPekrqr Psayn+fik ei+r+ka+nPd++h+eafs+aaknWa fP+ 
  KHN08270.1 105 IP----------MSH-HVVNKPPEKRQRTPSAYNCFIKKEIKRLKAENPDMAHKEAFSTAAKNWANFPQT 163
                 22..........222.3479************************************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.9E-6111164IPR006780YABBY protein
SuperFamilySSF470955.24E-9109163IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.105.0E-6114164IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MSTLNHLFDL PEQICYIQCG FCSTILMVSV PCSSLSMVVT VRCGHCTSLF SVNMSKASFI  60
PFHLLASLSH LEPKESSPEA DANKTLNSHS ASMMTYSDCE EEDVIPMSHH VVNKPPEKRQ  120
RTPSAYNCFI KKEIKRLKAE NPDMAHKEAF STAAKNWANF PQTQWCRGDE ESCSQTDQLV  180
NSQVDPPDAE VNEEGQGFRG RKVPRNSILE RTQFE
Functional Description ? help Back to Top
Source Description
UniProtEssential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN08270.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150432e-52AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028228388.11e-162axial regulator YABBY 4-like isoform X4
SwissprotQ9LDT32e-68YAB4_ARATH; Axial regulator YABBY 4
TrEMBLA0A445K7A31e-144A0A445K7A3_GLYSO; Axial regulator YABBY 4 isoform A
STRINGGLYMA04G10125.11e-139(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61442852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23420.19e-71YABBY family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  2. Lora J,Hormaza JI,Herrero M
    Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT).
    New Phytol., 2015. 208(2): p. 584-95
    [PMID:25991552]
  3. Skinner DJ,Brown RH,Kuzoff RK,Gasser CS
    Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function.
    BMC Plant Biol., 2016. 16(1): p. 143
    [PMID:27350128]
  4. Simon MK,Skinner DJ,Gallagher TL,Gasser CS
    Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors.
    Genetics, 2017. 207(4): p. 1489-1500
    [PMID:28971961]