PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN07851.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LBD
Protein Properties Length: 219aa    MW: 23536.9 Da    PI: 8.0609
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN07851.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26084.81.3e-2641081100
      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                 +C++C++lr++C +dC+++p++     p++q++++ +++k++G++ +++l++++p+++ +++++sl+yeA+ r+ +P  G+vg+++++++  +q+  ++
  KHN07851.1   4 SCNGCRILRKGCGEDCAIRPCLewintPQAQANATLFLAKFYGRAGLVNLIDSAPQHNGPAVFKSLLYEACGRIANPTFGSVGLFWTGEWAQCQALFDA 102
                 6*********************************************************************************************99888 PP

      DUF260  95 allkee 100
                 +l++++
  KHN07851.1 103 VLAGSQ 108
                 888776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.2833109IPR004883Lateral organ boundaries, LOB
PfamPF031958.4E-22498IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MKLSCNGCRI LRKGCGEDCA IRPCLEWINT PQAQANATLF LAKFYGRAGL VNLIDSAPQH  60
NGPAVFKSLL YEACGRIANP TFGSVGLFWT GEWAQCQALF DAVLAGSQIK VVGASDSQGI  120
ATHGDEHVAQ ILGIRHVSKD AEMDHVKGRA KKIKRSRTVI KPKPQVSSID SAAMLKLTWS  180
REPGGSEGDS EETVEAMLVS QNKPSRNGGV EMDLDLTLG
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN07851.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028247178.11e-161LOB domain-containing protein 41-like
TrEMBLA0A0B2PEM51e-162A0A0B2PEM5_GLYSO; LOB domain-containing protein 41
STRINGGLYMA08G31143.11e-160(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14785614
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.11e-63LOB domain-containing protein 41
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]