PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN07676.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 256aa    MW: 27677.1 Da    PI: 6.431
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN07676.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.82.4e-132351247
                     HHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 12 lvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +v a++ +G++ W++Iar ++ gRt++ +k++w++ 
       KHN07676.1  2 IVAAHAIHGNK-WAAIARLLP-GRTDNAIKNHWNST 35
                     699********.*********.***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.3E-15137IPR009057Homeodomain-like
SMARTSM007172.5E-4138IPR001005SANT/Myb domain
PROSITE profilePS5129420.62140IPR017930Myb domain
CDDcd001671.14E-8136No hitNo description
PfamPF002492.1E-10235IPR001005SANT/Myb domain
SuperFamilySSF466891.48E-9238IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MIVAAHAIHG NKWAAIARLL PGRTDNAIKN HWNSTLRRRG VGHDTIKLES VSFMEDVSLE  60
KAKASSEDTL SCGDVSLKSS EGRDVSSMEI MDDKSDDKAQ TEGQIHHEVK DLPTLFRPVA  120
RVSAFNVYHS FDGTQPSTSI KRPVPMQGAV LQSSKPDMEF CRMLEGICGD QSVPHQCGHG  180
CCAAPDGRKS ESSLLGPEFV EFSEPPSFPN FELAAIATDI SNLAWLKSGL ESSSAKMMGN  240
TSGRVVSNGS QVHIGH
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN07676.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003516915.10.0transcription factor MYB1
RefseqXP_028235689.10.0transcription factor MYB1-like
SwissprotQ425752e-69MYB1_ARATH; Transcription factor MYB1
TrEMBLA0A0B2PE430.0A0A0B2PE43_GLYSO; Myb-related protein B
STRINGGLYMA01G26650.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39863362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09230.18e-72myb domain protein 1
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  2. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  3. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]
  4. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]
  5. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]