PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN07576.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 93aa    MW: 11051.4 Da    PI: 8.9564
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN07576.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.21.6e-072366344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +WT    +++ +a  ++  +   +W  Ia+++g +++ +++k ++
       KHN07576.1 23 SWTRLQNKQFEKALVLYDEHtrdRWQNIAKEVG-NKSVEEVKRHY 66
                     69999999999999999999999**********.**********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.7221974IPR017884SANT domain
SMARTSM007174.1E-62072IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-82173IPR009057Homeodomain-like
CDDcd001671.46E-52366No hitNo description
SuperFamilySSF466892.02E-112376IPR009057Homeodomain-like
PfamPF002498.4E-62466IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MKVRNPMASN SLNNSNNKEH FPSWTRLQNK QFEKALVLYD EHTRDRWQNI AKEVGNKSVE  60
EVKRHYAILL EDLSRMESGR VPIPDYKFSE NMD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-2024891176RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN07576.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003537461.12e-50protein RADIALIS-like 4
RefseqXP_028196777.12e-50protein RADIALIS-like 4
SwissprotQ1A1731e-27RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A445FNQ72e-62A0A445FNQ7_GLYSO; Thaumatin-like protein
STRINGGLYMA18G04120.16e-59(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.25e-30RAD-like 6
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]