PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN06800.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LBD
Protein Properties Length: 171aa    MW: 18738.6 Da    PI: 7.7088
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN06800.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26095.65.2e-302102196
      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                 +C++C+vlr++C++dC+l+ ++     p++q++++ +v k+FG+++++++l+++p+++r+++++sl+yeA  r+ +Pv+Gavg++++++++l+q+ +e 
  KHN06800.1   2 SCNGCRVLRKGCSDDCMLRHCLlwienPQAQAHATLFVTKFFGRATLMSFLSTVPPNQRSALFESLLYEAVGRTINPVNGAVGLLWTGNWHLCQMGVEK 100
                 6*********************************************************************************************98876 PP

      DUF260  95 al 96 
                 +l
  KHN06800.1 101 VL 102
                 65 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.7951107IPR004883Lateral organ boundaries, LOB
PfamPF031956.9E-27299IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSDDCMLR HCLLWIENPQ AQAHATLFVT KFFGRATLMS FLSTVPPNQR  60
SALFESLLYE AVGRTINPVN GAVGLLWTGN WHLCQMGVEK VLRGGAAAAL TPLIPQVITT  120
SVVRGEIMCH QPKKQCVGTP SEDEESETST FASRPQDSAP QPQTNLLTLF F
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN06800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2351771e-84AC235177.1 Glycine max strain Williams 82 clone GM_WBb0007H11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003535688.11e-126LOB domain-containing protein 38
RefseqXP_028182561.11e-126LOB domain-containing protein 38-like
SwissprotQ9SN231e-55LBD38_ARATH; LOB domain-containing protein 38
TrEMBLA0A445ISS91e-124A0A445ISS9_GLYSO; LOB domain-containing protein 38
TrEMBLK7LLG51e-124K7LLG5_SOYBN; Uncharacterized protein
STRINGGLYMA10G40421.11e-125(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.14e-57LOB domain-containing protein 38
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]