PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN04448.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LBD
Protein Properties Length: 168aa    MW: 18195 Da    PI: 8.2267
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN04448.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26087.22.1e-272103197
      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                 +C++C+vlr++C++ C l+  +     p++q++++ +++k+FG+s ++ +++++p ++r+++++sl++eA+ r+ +Pv+Gavg++l+++++++q+++++
  KHN04448.1   2 SCNGCRVLRKRCSERCSLRSSLnwidcPHAQAHATLFLAKFFGRSDLMFFISSVPLNNRPALFQSLLFEACGRTVNPVNGAVGLLLSGNWHVCQAAVHT 100
                 6**********************************************************************************************9987 PP

      DUF260  95 all 97 
                 +l+
  KHN04448.1 101 VLA 103
                 765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.9081107IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-232101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MSCNGCRVLR KRCSERCSLR SSLNWIDCPH AQAHATLFLA KFFGRSDLMF FISSVPLNNR  60
PALFQSLLFE ACGRTVNPVN GAVGLLLSGN WHVCQAAVHT VLAGGVLRPL SEVVAPSESM  120
FSHQFQSLAS DSLKRSSDAT APVMSTMVSG ESEICSSDDG KKLLNLFV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130135DSLKRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN04448.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001340895.11e-120LBD domain-containing transcription factor
RefseqXP_028227721.11e-120LOB domain-containing protein 39-like
SwissprotQ9SZE84e-55LBD39_ARATH; LOB domain-containing protein 39
TrEMBLA0A0R0K3S61e-119A0A0R0K3S6_SOYBN; Uncharacterized protein
TrEMBLA0A445KVY61e-119A0A445KVY6_GLYSO; LOB domain-containing protein 39
STRINGGLYMA04G04750.11e-110(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.12e-48LOB domain-containing protein 39