PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN02751.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HSF
Protein Properties Length: 390aa    MW: 45496.2 Da    PI: 4.6931
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN02751.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.43.1e-35451372103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y+i++d+++++++sws+ +nsfvv+d++ f+ ++Lpk+Fkh+nf+SFvRQLn+YgFkkv+ ++         weF+++ F +g++ ll++i+
    KHN02751.1  45 FLTKTYDIVDDPSTNHIVSWSTGNNSFVVWDPQAFSVTLLPKFFKHNNFSSFVRQLNTYGFKKVDPDK---------WEFANEMFLRGQRILLKNIR 132
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k +
    KHN02751.1 133 RRKAN 137
                   **975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467859.25E-3541134IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.1E-6041134IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.2E-3841134IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000565.0E-194568IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.1E-3045134IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.0E-198395IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434084108IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.0E-1996108IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MNPHGLVKEE FLGESSSFCG GYDPQPIMVV PQPIEGLHET GPPPFLTKTY DIVDDPSTNH  60
IVSWSTGNNS FVVWDPQAFS VTLLPKFFKH NNFSSFVRQL NTYGFKKVDP DKWEFANEMF  120
LRGQRILLKN IRRRKANHHQ SHQHAMQQGV EEPFVEVGQF ELDGEIDRLR RDRQVLMVEL  180
VKLRQQQQST KSHLQEMEGR IKMTEQKQKQ MMNFLARAMQ NPNFVQQLAQ QKEWRKELEE  240
VFSNKKRRPI DQGPNVVEVA DDDDELLGCA EECSDFVKLE PQEYYSDDKV LEFEVPDLDL  300
ALNLDEENIE SQKRIMEEEH VQLENSRERY IDEVFWQDLL NEGIEDQGVL GVEDVDVLAK  360
QLDSISWPKF KARGYQEING VVVLRARCLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-243613417129Heat shock factor protein 1
5d5v_B2e-243613417129Heat shock factor protein 1
5d5v_D2e-243613417129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167172RLRRDR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003536509.10.0PREDICTED: heat stress transcription factor A-6b
SwissprotQ9LUH81e-121HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A0B2P0890.0A0A0B2P089_GLYSO; Heat stress transcription factor A-6b
STRINGGLYMA10G38930.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-118heat shock transcription factor A6B
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]