PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN02551.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HSF
Protein Properties Length: 370aa    MW: 42405.4 Da    PI: 5.2745
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN02551.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.11.6e-34491402102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y+ +ed+++++++sw++ g sfvv+d++ f++++Lp+yFkh+nf+SFvRQLn+YgF+k++ ++         weF+++ F +g++++l +i+
    KHN02551.1  49 FLTKTYDAVEDPTTSHMVSWNRGGASFVVWDPHAFSRDLLPRYFKHNNFSSFVRQLNTYGFRKIDPDR---------WEFANEGFLRGHRHQLASIR 136
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k+
    KHN02551.1 137 RRKQ 140
                   **97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.5E-3743132IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467859.79E-3445138IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.7E-5645138IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.9E-194972IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.0E-3149138IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.9E-198799IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434088112IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.9E-19100112IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MNYLYPVKEE YLESPPPSSS SPTTGVDESA MVPPPRPMEG LHEIGPPPFL TKTYDAVEDP  60
TTSHMVSWNR GGASFVVWDP HAFSRDLLPR YFKHNNFSSF VRQLNTYGFR KIDPDRWEFA  120
NEGFLRGHRH QLASIRRRKQ PSRPYSSSSS SQQAQGHCVE VGRFGLDEEV DRLRRDKHVL  180
MMELVRLRQQ QLNTRSYLQA MEERLRGTEI KQQQMMAFLA RALKNPTFIQ QLLQQKEKRK  240
ELEEAMSKKR RRPIEGGPSG VGEPSSGGEE GRSSVKVEPL VLGEYGFGVS ELEVLAMEMQ  300
GYGRGRREQE EEPEALESQE RLEKELDEGF WEELFSEGFE GELDIPTSQD QDEDVSVLAN  360
RFGYLGSSPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-224713818120Heat shock factor protein 1
5d5u_B2e-224713827129Heat shock factor protein 1
5d5v_B2e-224713827129Heat shock factor protein 1
5d5v_D2e-224713827129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1237251KRKELEEAMSKKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006604466.10.0PREDICTED: heat stress transcription factor A-2c-like
SwissprotQ9LUH81e-125HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A0B2NZH30.0A0A0B2NZH3_GLYSO; Heat stress transcription factor A-6b
STRINGGLYMA19G34210.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.14e-94heat shock transcription factor A6B
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]