PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN02338.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARF
Protein Properties Length: 698aa    MW: 77528.2 Da    PI: 8.1651
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN02338.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3733.6e-23129230199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f k+lt+sd+++ g +++p+ +ae++         ++ +   +  +d +g++W++++iyr++++r++lt+GW++Fv+ ++L +gD++vF +   ++  l
  KHN02338.1 129 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--NILAKDVHGETWKFRHIYRGTPRRHLLTTGWSSFVNHKKLVAGDSIVFLR--AEKDDL 223
                 89****************************997656666..69999********************************************3..477778 PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 +v+++r+
  KHN02338.1 224 RVGIRRA 230
                 ****996 PP

2Auxin_resp110.22.2e-36292374183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                 aa+ a+++++FevvY+Pras++eF+vk++ v++al+v++++GmRfkm fetedss++++ +Gt+++v+ +dp rWpnS+Wr+L+
  KHN02338.1 292 AATLAANMQPFEVVYYPRASAPEFCVKANLVRAALQVRWCPGMRFKMPFETEDSSRISWfMGTISSVNFADP-RWPNSPWRLLQ 374
                 68899*******************************************************************.*********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.7E-38120232IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-29122231IPR015300DNA-binding pseudobarrel domain
CDDcd100177.17E-21127229No hitNo description
SMARTSM010193.5E-21129231IPR003340B3 DNA binding domain
PfamPF023622.2E-21129230IPR003340B3 DNA binding domain
PROSITE profilePS5086312.788129231IPR003340B3 DNA binding domain
PfamPF065071.8E-30292374IPR010525Auxin response factor
PROSITE profilePS5174518.598612692IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 698 aa     Download sequence    Send to blast
MQEFAVRTGY CMMESKEKLK EVEKCLDSRL WHACAGGMVQ MPVVNAKVFY FPQGHAEHAC  60
GPVDFRVYPK IPPFIQCKVG AIKYMADPET DEVYVKLRLV PLTRNEGDFE DDAVGGINGS  120
ENKDKSPSFA KTLTQSDANN GGGFSVPRYC AETIFPRLDY SADPPVQNIL AKDVHGETWK  180
FRHIYRGTPR RHLLTTGWSS FVNHKKLVAG DSIVFLRAEK DDLRVGIRRA KRGIGIGGGP  240
EAPAGWNSGG GIRPMPYGGF SAFLREEDSQ LLRNGLSPNA KGKVRPEAVI EAATLAANMQ  300
PFEVVYYPRA SAPEFCVKAN LVRAALQVRW CPGMRFKMPF ETEDSSRISW FMGTISSVNF  360
ADPRWPNSPW RLLQVTWDEP ELLQNVKRVS PWLVEIVSNM PTIHLSHYST QQKKPRFPQH  420
PDFSFDGQIS LPAFPSNFLG PSNPFGCLAE STPAGIQGAR HANYGISLSN LHFNKLQSGL  480
FQAGFPPLDH TASPVLRVSS NNAATMQKVG TGDNVSCLLS MSTATQPSKK VDDVKAPQLV  540
LFGQTILTEQ QISLNTSAKT DPTRNNSFDG NADKMCKFSD GFGYALHPQG SSLERLQWYK  600
DQQKETMASL ETGHCKVFME SEDIGRTMDL TMLGSYDELY RKLADMFGIE KSVVLSHMLY  660
RDTTGAVKHI GDEAFSEFTK TARRLTILMD SNSDGRGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-792639551388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN02338.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006604575.10.0auxin response factor 18
RefseqXP_028218047.10.0auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A445FI470.0A0A445FI47_GLYSO; Auxin response factor
STRINGGLYMA19G36571.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  3. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]