PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN02300.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 272aa    MW: 29869.5 Da    PI: 8.4847
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN02300.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.001484106123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 y+C+ C+++F++   L  H  +H
  KHN02300.1  84 YECKTCNRCFPSFQALGGHRASH 106
                 99**********99999998887 PP

2zf-C2H213.90.00016175197123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C++Cg  Fs+   L  H+r+H
  KHN02300.1 175 HECSICGAEFSSGQALGGHMRKH 197
                 78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.12E-883106No hitNo description
SMARTSM003550.1484106IPR015880Zinc finger, C2H2-like
PfamPF139121.8E-1084108IPR007087Zinc finger, C2H2
PROSITE profilePS501579.34984111IPR007087Zinc finger, C2H2
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
SuperFamilySSF576671.12E-8170197No hitNo description
Gene3DG3DSA:3.30.160.606.5E-4173197IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.4E-12174198IPR007087Zinc finger, C2H2
PROSITE profilePS501579.723175197IPR007087Zinc finger, C2H2
SMARTSM003550.0087175197IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280177197IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MQIIKGKRTK RQRLPSPLRL TMSTTCSSLG RSSTDNSVGF DIPTTSNESR NEEEDMANCL  60
ILLAQGHNNT PKPSRTNKGG LYLYECKTCN RCFPSFQALG GHRASHKKYS KASAEEKQGV  120
ATTFVNYEVD NNNNNHNHDD YCDPTSTPLT LQLSTALYNN SSSIRSTINA KAKVHECSIC  180
GAEFSSGQAL GGHMRKHRNF LSAPIIGAIN IANGGDGSPK VPEAKKHKDV LNLDLNLPAP  240
EDDHLRESNL FPFQAKEKVI VFSATSLVDC HY
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN02300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9671270.0KC967127.1 Glycine max C2H2-type zinc finger protein 6 (ZFP6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001304465.20.0C2H2-type zinc finger protein 6
RefseqXP_028217850.10.0zinc finger protein ZAT5-like
TrEMBLA0A059TAM30.0A0A059TAM3_SOYBN; C2H2-type zinc finger protein 6
TrEMBLA0A445FID40.0A0A445FID4_GLYSO; Zinc finger protein ZAT5
TrEMBLK7MZ350.0K7MZ35_SOYBN; Uncharacterized protein
STRINGGLYMA19G37010.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.15e-48C2H2 family protein