PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN00534.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 73aa    MW: 8720.71 Da    PI: 9.9995
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN00534.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.31.5e-07446344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +WT+   +l+ +a +++  +   +W  +a+++g  ++ +++k ++
       KHN00534.1  4 SWTPRQNKLFERALAKYDREtpdRWQNVANEVG--KSVEEVKRHY 46
                     7*****************88************8..9********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.2E-6152IPR001005SANT/Myb domain
PROSITE profilePS5129313.57154IPR017884SANT domain
SuperFamilySSF466891.91E-12357IPR009057Homeodomain-like
CDDcd001674.11E-5450No hitNo description
Gene3DG3DSA:1.10.10.601.3E-6456IPR009057Homeodomain-like
PfamPF002498.0E-6446IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 73 aa     Download sequence    Send to blast
MASSWTPRQN KLFERALAKY DRETPDRWQN VANEVGKSVE EVKRHYEILK EDIRRIERGQ  60
VAFPYRTSNS NSH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-245711179RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN00534.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003547982.16e-46protein RADIALIS-like 1
SwissprotQ1A1733e-25RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLI1JCP33e-47I1JCP3_SOYBN; Uncharacterized protein
STRINGGLYMA02G06230.15e-48(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.18e-28RAD-like 6
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]