PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHM99358.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 651aa    MW: 73671.7 Da    PI: 5.7048
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHM99358.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.66e-08544592247
                      SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 
                      g+WT++E+++++d+vk  +       W+   +t++ ++++++++s+++++
       KHM99358.1 544 GSWTEQEEKKFKDVVKSNPASlekcFWDHLFKTFP-KKSREDLVSYYFNV 592
                      79*****************99**************.9**********996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5101117.004165IPR001606ARID DNA-binding domain
SMARTSM005011.3E-4166IPR001606ARID DNA-binding domain
PfamPF013881.3E-7459IPR001606ARID DNA-binding domain
Gene3DG3DSA:1.10.150.601.3E-12471IPR001606ARID DNA-binding domain
SuperFamilySSF467741.44E-14473IPR001606ARID DNA-binding domain
SMARTSM011890.0044445497IPR000949ELM2 domain
CDDcd001670.00126545593No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
MMSNGDPLDL YKLFMVVKEK GGYDAVCKNK LWDLVGEEYG LGVKVGSSAE LVYSKHLSSL  60
EACLKNATDG KFPECGLIDD RVKFHKHLME AQAESLLDDS GEEEAGDELE RIVCDCKDGR  120
KLCGSNRVKY VKPESNVAEL ERVYEYLDET KSCVSDSVKG KKSDSNGDEF DNVCDFLDGR  180
ELCDTNRVKG VSPESNGDKK VQSKGLVDLD MLDNGTDEHI IRNLCSLNTE RNILEEFDGG  240
KILTVDASDA ESNMPRLSDG SKCCDNDDDD DSDEVLILDP SGVDKEIFGR KRKRESKSEM  300
LSWITSIAKN PCDSTVGSIP EKSKWKFYSS QEIWKQVLLF REAVFLKKDF ETTSEQLNWQ  360
GQKMHPSMYD DRVGAMYNLR QRLKCDKRVL LGKTTSGGVS LASSGGTHVD LERTPSSHAE  420
DRAEKLLPDS GTAHSSLDRC ARVHIPLGPN HQAEVPEWTV ITYEVDSKWL GTQIWPPKTV  480
NSKCRLFERD PIGEGRQNSC GCQVQGSVEC VRFHIAKRRA KVKLELGEAF HQWNLHKVGE  540
EVGGSWTEQE EKKFKDVVKS NPASLEKCFW DHLFKTFPKK SREDLVSYYF NVFLLQRRAY  600
QNRHTPDNID SDDDESEFTP LRKVFGHQTP KPRSFTLLSP KKATFKRENN K
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHM99358.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006602810.10.0AT-rich interactive domain-containing protein 1
RefseqXP_006602811.10.0AT-rich interactive domain-containing protein 1
RefseqXP_025982496.10.0AT-rich interactive domain-containing protein 1
RefseqXP_028214578.10.0AT-rich interactive domain-containing protein 1-like
RefseqXP_028214579.10.0AT-rich interactive domain-containing protein 1-like
TrEMBLA0A0B2NVS20.0A0A0B2NVS2_GLYSO; AT-rich interactive domain-containing protein 1
STRINGGLYMA18G46951.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43731724
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]