PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHM98881.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LBD
Protein Properties Length: 237aa    MW: 24424.5 Da    PI: 6.8571
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHM98881.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260104.49.7e-333212211100
      DUF260  11 kCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
                 +C+++C++apyf +eq + +fa+vhk+FGasnv+kll ++p  +r da+ +++yeA+ar+rdPvyG+v++i++lqqq+ +l+ael++l+ +
  KHM98881.1  32 GCVPGCIFAPYFDSEQgATHFAAVHKVFGASNVSKLLLNIPVYKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVSLQAELSYLQGH 122
                 7*************9989********************************************************************99865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.34221123IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-3132120IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MSINSSCSIS GGSSSGGNNN GAGGSGGNNG GGCVPGCIFA PYFDSEQGAT HFAAVHKVFG  60
ASNVSKLLLN IPVYKRLDAV VTICYEAQAR LRDPVYGCVA HIFALQQQVV SLQAELSYLQ  120
GHLATLELPQ PPPPPPSSPQ ATTMAPPVIS IAELPSTVPA TYDLSSLFDP MAQSPSWAVQ  180
PRPIESRQYV GSGPSGPSAT SASGGDLQAL ARELLHRHGS APVVACSNPS YSHPISK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2354100.0AC235410.1 Glycine max strain Williams 82 clone GM_WBb0128C24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003521944.11e-129PREDICTED: LOB domain-containing protein 18-like
SwissprotO221319e-73LBD18_ARATH; LOB domain-containing protein 18
TrEMBLA0A0B2NTR51e-172A0A0B2NTR5_GLYSO; LOB domain-containing protein 18
STRINGGLYMA03G02620.11e-129(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.15e-69LOB domain-containing protein 18
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]