PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.N023400.1
Common NameB456_N023400, LOC105785034
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TCP
Protein Properties Length: 366aa    MW: 39735.1 Da    PI: 9.737
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.N023400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP125.84.6e-39471712119
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg...... 88 
                      ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa+ ++tgt++++a+++  + s +ss+s+ s++      
  Gorai.N023400.1  47 PPKRTSTKDRHTKVEGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAVFAATGTGTIPANFTsLNISLRSSGSSMSAShlrnty 140
                      789******************************************************************9998666666666644444555566 PP

              TCP  89 ................kaaksaakskksqksaasalnlak.esrakar 119
                                      +                 ++n+ + +s+++++
  Gorai.N023400.1 141 fnpnfttqqlrtrsewD-----------------QRNVLDdSSQQQQQ 171
                      43222222222222220.................23333313333333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.1E-3951170IPR005333Transcription factor, TCP
PROSITE profilePS5136927.00153107IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MIMDENGIRR PNFPLQLLEK KEQPRSDPAD VDTSSKPTLE PPSKKPPPKR TSTKDRHTKV  60
EGRGRRIRMP ATCAARVFQL TRELGHKSDG ETIEWLLQQA EPAVFAATGT GTIPANFTSL  120
NISLRSSGSS MSASHLRNTY FNPNFTTQQL RTRSEWDQRN VLDDSSQQQQ QQRRVLFPGV  180
ALSSEDSLTF PGTSSTTLNA FLQAKQEIRD AEAADTSIGK RRRPEQQESP QNQVGSYLIQ  240
SNTGSIPTSH NPIPATFWIG NQVISGSGTG DPMWTFPSTN NTNMYRGTMS SGVHFMNLAA  300
PMALLPAQQF GSGIGAGGSS VTDTHLSMLA SLNAYRPVPG IGVSEPPAGG SHQHHGGENR  360
HDSTS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5275041e-118HQ527504.1 Gossypium herbaceum clone NBRI_C_EYT27PB01AVN7Y simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012466418.10.0PREDICTED: transcription factor TCP15-like
TrEMBLA0A0D2WAQ70.0A0A0D2WAQ7_GOSRA; Uncharacterized protein
STRINGGorai.N023400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39152757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69690.11e-39TCP family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]