PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G268200.1
Common NameB456_013G268200, LOC105781742
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TCP
Protein Properties Length: 197aa    MW: 21060.7 Da    PI: 8.746
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G268200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP108.88.1e-3435110378
                 TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaess 78 
                          kk++++++h+kv+gRdRR+Rl+  caar+F+L++eLG+++d++ti WLl+qa+p+i ++tgt+ s  s +     ++
  Gorai.013G268200.1  35 NKKTTTKDRHAKVDGRDRRIRLPTVCAARIFQLTRELGLKTDGETIAWLLRQAEPSIVAATGTGVSETSTTpgP--TN 110
                         59*************************************************************66666555331..11 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.4E-2738114IPR005333Transcription factor, TCP
PROSITE profilePS5136924.8414094IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MASSKNMGLE MALSTNPSTK KPRTGSANKA STSKNKKTTT KDRHAKVDGR DRRIRLPTVC  60
AARIFQLTRE LGLKTDGETI AWLLRQAEPS IVAATGTGVS ETSTTPGPTN NNSTNTGLVP  120
FSTGSDSPLA TSDYTPCLTF LQEPDRMLLK NSGDVSRGEP SLPPLEFDFD LEFSAHEMAM  180
FQSVAAAANH DKEGKI*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves, roots, and stems. {ECO:0000269|PubMed:19286557}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of the circadian clock. Acts as a repressor of CCA1 by binding to its promoter. No binding to the LHY promoter. {ECO:0000269|PubMed:19286557}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012461704.11e-143PREDICTED: transcription factor PCF1-like
SwissprotQ9FTA28e-31TCP21_ARATH; Transcription factor TCP21
TrEMBLA0A0D2SJY41e-142A0A0D2SJY4_GOSRA; Uncharacterized protein
STRINGGorai.013G268200.11e-142(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17822685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.11e-29TCP family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Wu JF, et al.
    LWD-TCP complex activates the morning gene CCA1 in Arabidopsis.
    Nat Commun, 2016. 7: p. 13181
    [PMID:27734958]
  3. Ng DW,Chen HH,Chen ZJ
    Heterologous protein-DNA interactions lead to biased allelic expression of circadian clock genes in interspecific hybrids.
    Sci Rep, 2017. 7: p. 45087
    [PMID:28345627]
  4. Lee CM, et al.
    Decoys Untangle Complicated Redundancy and Reveal Targets of Circadian Clock F-Box Proteins.
    Plant Physiol., 2018. 177(3): p. 1170-1186
    [PMID:29794020]