PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G210300.1
Common NameB456_013G210300, LOC105784178
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family M-type_MADS
Protein Properties Length: 164aa    MW: 18678.7 Da    PI: 10.6959
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G210300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.69e-151151343
                        --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
              SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                        i n+s r++t+ kR +g+lKK  E+ +LC++++ v+i s++
  Gorai.013G210300.1 11 ITNDSARKTTYKKRSKGLLKKVREITTLCGIQAFVVINSPD 51
                        89***********************************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.7E-18161IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.923149IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-7323IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.62E-20395IPR002100Transcription factor, MADS-box
CDDcd002661.87E-21386No hitNo description
PfamPF003194.8E-141151IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-72338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MSRKKIKLAY ITNDSARKTT YKKRSKGLLK KVREITTLCG IQAFVVINSP DFGSQAEVWP  60
SLEDARRLLS EFKKLPLSKQ NKNMVNQESF LEQSLAKATQ QLRKLRKENH QKELKEVMFE  120
SLSGKGILQS LNAMDLDEVD LLIKQNLADI DNRVRVLTKA SRS*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the central cell of the female gametophyte and in early endosperm. Also detected in ovaries, young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269|PubMed:16798889}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2431018e-73AC243101.1 Gossypium arboreum clone GM203N05-jhe, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012465436.11e-115PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK35e-43AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A0D2SHM71e-114A0A0D2SHM7_GOSRA; Uncharacterized protein
STRINGGorai.013G210300.11e-115(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-45AGAMOUS-like 80
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]