PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G204200.1
Common NameB456_013G204200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family RAV
Protein Properties Length: 335aa    MW: 38083.1 Da    PI: 9.0924
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G204200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.82e-113986154
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                        s+ykGV + k +g+W A+++    n  ++r++lg+f ++ +Aa a++ a+ k++
  Gorai.013G204200.1 39 SQYKGVMRQK-NGQWGAQLYT---N--HTRIWLGTFKSEIDAAMAYDSAAIKFR 86
                        78****8676.8******655...3..5**********99**********9987 PP

2B381.11.1e-25158255184
                         EEEE-..-HHHHTT-EE--HHH.HTT..............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                         f+k+ltpsdv++++rlv+pkk+a ++              g+ k+++++l+++d+  r W+++++y+++s+++v+t+GW++F k+++Lk++
  Gorai.013G204200.1 158 FQKELTPSDVGQLNRLVIPKKYAVKYfppvsgtekenadvGHRKTNDVELIFYDKFMRIWKFRYCYWNSSQSFVFTRGWNRFLKEKELKAN 248
                         99*******************************999999999999********************************************** PP

                         -EEEEEE CS
                  B3  78 DfvvFkl 84 
                         D+v F +
  Gorai.013G204200.1 249 DVVSFFV 255
                         ****974 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.6E-73986IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-153997IPR016177DNA-binding domain
CDDcd000183.95E-213997No hitNo description
Gene3DG3DSA:3.30.730.105.8E-174095IPR001471AP2/ERF domain
PROSITE profilePS5103217.4774095IPR001471AP2/ERF domain
SMARTSM003806.3E-1840101IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.109.6E-31154267IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.81E-26157259IPR015300DNA-binding pseudobarrel domain
CDDcd100177.18E-23157253No hitNo description
PfamPF023621.8E-22158255IPR003340B3 DNA binding domain
SMARTSM010191.5E-20158273IPR003340B3 DNA binding domain
PROSITE profilePS5086312.182158273IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MSSVILSGEA NINSDVSDST STTHQANKRQ RCGGKGNSSQ YKGVMRQKNG QWGAQLYTNH  60
TRIWLGTFKS EIDAAMAYDS AAIKFRTGDT HRNFPWNEIT IEEPTFLSHY SAEAVLSMIR  120
DGSYQYKFMD FIKAHSGNTK LNLVGTYSNE GLICKQLFQK ELTPSDVGQL NRLVIPKKYA  180
VKYFPPVSGT EKENADVGHR KTNDVELIFY DKFMRIWKFR YCYWNSSQSF VFTRGWNRFL  240
KEKELKANDV VSFFVCECRK ENEVRRFCMI DANKSGNGGT FVSANNVHVG IEVDLQLRLG  300
HCYLVQEEQG SMAAAKPKQD DKTEGFKLFG MQIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A9e-2815425310100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6147525e-51JX614752.1 Gossypium hirsutum clone NBRI_GE58377 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012461660.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like
RefseqXP_016669850.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like
SwissprotQ9C6P59e-95RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLA0A1U8HV100.0A0A1U8HV10_GOSHI; AP2/ERF and B3 domain-containing transcription factor At1g51120-like
STRINGGorai.013G204200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15647617
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.14e-97RAV family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]