PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G204000.1
Common NameB456_013G204000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family RAV
Protein Properties Length: 349aa    MW: 39851.1 Da    PI: 9.0647
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G204000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.22.7e-104390154
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                        s++kGV + k +g+W A+++    n  ++r++lg+f t+ +Aa a++ a  k++
  Gorai.013G204000.1 43 SQFKGVMRQK-NGQWGAQLYT---N--HTRIWLGTFKTEIDAAVAYDSAVIKFR 90
                        789***8666.8******655...3..5**********99********998876 PP

2B381.96.2e-26166263184
                         EEEE-..-HHHHTT-EE--HHH.HTT..............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                         f+k+ltpsdv+k++rlv+pkk+a ++              g  k+++++l+++d+  r W+++++y+++s+++v+t+GW++F k+++Lk++
  Gorai.013G204000.1 166 FQKELTPSDVGKLNRLVIPKKYAVKYfppvswtekenadiGDRKTNHVELVFYDKFMRIWKFRYCYWNSSQSFVFTRGWNRFLKEKELKAN 256
                         99**************************************88999********************************************** PP

                         -EEEEEE CS
                  B3  78 DfvvFkl 84 
                         D+v F +
  Gorai.013G204000.1 257 DVVSFFV 263
                         ****974 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.68E-1443100IPR016177DNA-binding domain
CDDcd000183.44E-194399No hitNo description
PROSITE profilePS5103216.8454499IPR001471AP2/ERF domain
SMARTSM003808.1E-1744105IPR001471AP2/ERF domain
PfamPF008472.3E-54488IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-1644100IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.8E-30162273IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-26165267IPR015300DNA-binding pseudobarrel domain
CDDcd100179.33E-23165261No hitNo description
SMARTSM010199.0E-21166281IPR003340B3 DNA binding domain
PfamPF023626.6E-23166263IPR003340B3 DNA binding domain
PROSITE profilePS5086312.069166281IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MEEEILSVIS SGEANTNSDV SDSISTTHQA NKSQRCGSKG NSSQFKGVMR QKNGQWGAQL  60
YTNHTRIWLG TFKTEIDAAV AYDSAVIKFR PGDTHRNFPR NEITIEEPKL LSHYSAEAAL  120
SMIRDGSSQY KFMDFIKARS RSIKPSIALN SVETYSNEGL ICKQLFQKEL TPSDVGKLNR  180
LVIPKKYAVK YFPPVSWTEK ENADIGDRKT NHVELVFYDK FMRIWKFRYC YWNSSQSFVF  240
TRGWNRFLKE KELKANDVVS FFVCECRKEN EVRRFCMIDA NKSGNGGTFV AVNTVHVGIE  300
VDLQLRLGHY YPIGDEKHVQ EEQGSMATAK QKQDDKTEGF KLFGMQIN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A8e-2816226110100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6147525e-76JX614752.1 Gossypium hirsutum clone NBRI_GE58377 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012461659.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like
SwissprotQ9C6P57e-91RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLA0A0D2VJC40.0A0A0D2VJC4_GOSRA; Uncharacterized protein
STRINGGorai.013G204000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15647617
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.13e-93RAV family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]