PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G169800.1
Common NameB456_013G169800, LOC105782855
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family SBP
Protein Properties Length: 183aa    MW: 20318.7 Da    PI: 9.3478
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G169800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1391.3e-4354131178
                         --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                 SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                         +Cqve+C  dls+ak+yhrrhkvCe+h+kap v+v+gl+qrfCqqCsrfhel efDe+krsCrrrLa+hnerrrk++a
  Gorai.013G169800.1  54 ACQVEKCGLDLSDAKRYHRRHKVCEIHAKAPFVVVAGLRQRFCQQCSRFHELPEFDEAKRSCRRRLAGHNERRRKSSA 131
                         5**************************************************************************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.7E-3647116IPR004333Transcription factor, SBP-box
PROSITE profilePS5114133.09452129IPR004333Transcription factor, SBP-box
SuperFamilySSF1036127.59E-4153132IPR004333Transcription factor, SBP-box
PfamPF031102.5E-3355128IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MNKDFIAEGL DNDMQEEEEE GVGGDHGFPD DEKKKKGYGR RGAAGGGGGV SPPACQVEKC  60
GLDLSDAKRY HRRHKVCEIH AKAPFVVVAG LRQRFCQQCS RFHELPEFDE AKRSCRRRLA  120
GHNERRRKSS AESSSAAESS SRRGMMISAQ LKESHYLADD QRARVNPMAI HGSSSFKRSQ  180
IR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-3745128184squamosa promoter binding protein-like 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ5691100.0KJ569110.1 Gossypium hirsutum squamosa promoter binding protein 3 (SBP3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012463358.11e-131PREDICTED: squamosa promoter-binding-like protein 3
SwissprotQ9S7A94e-47SPL4_ARATH; Squamosa promoter-binding-like protein 4
TrEMBLA0A0D2SFJ71e-131A0A0D2SFJ7_G
STRINGPOPTR_0001s40870.13e-62(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86828118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15270.13e-38squamosa promoter binding protein-like 5
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]