PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G146300.2
Common NameB456_013G146300
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 308aa    MW: 34866.9 Da    PI: 4.9061
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G146300.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM180.25.4e-5661331128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                         lppGfrFhPtdeelv +yL +k++g+++el e+i+evd+yk+ePwdLp k  + +++ ewyf+s+rdkky++g+r+nrat+ gyWkatgkd
  Gorai.013G146300.2   6 LPPGFRFHPTDEELVAYYLDRKISGRTIEL-EIIPEVDLYKCEPWDLPdKsFLPSKDMEWYFYSPRDKKYPNGSRTNRATRGGYWKATGKD 95 
                         79****************************.99**************96435566888********************************* PP

                 NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++v + ++++vg+kktLv+y+grap+g +t+Wvmheyrl
  Gorai.013G146300.2  96 RAVQT-SKAVVGMKKTLVYYRGRAPHGIRTNWVMHEYRL 133
                         ****9.999****************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-603139IPR003441NAC domain
PROSITE profilePS5100555.6786157IPR003441NAC domain
PfamPF023653.5E-297133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MAPMTLPPGF RFHPTDEELV AYYLDRKISG RTIELEIIPE VDLYKCEPWD LPDKSFLPSK  60
DMEWYFYSPR DKKYPNGSRT NRATRGGYWK ATGKDRAVQT SKAVVGMKKT LVYYRGRAPH  120
GIRTNWVMHE YRLLHSASPT APSSLKKNIQ IPKTKEAPVD NNQSFGDEIS RGREAEVEDE  180
NFNTSSSDVT QGTPNETGVA DEYQPPFTSD EANSSANLSS LGPDFSSHPF QIPSYTNLHY  240
QAPYPPLELE DFPQINIISE TKASKAEIID EYMMYDKCKD YMNGSLEEIF SLCASQDNSM  300
PPLSMHD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-53114515157NAC domain-containing protein 19
3swm_B2e-53114515157NAC domain-containing protein 19
3swm_C2e-53114515157NAC domain-containing protein 19
3swm_D2e-53114515157NAC domain-containing protein 19
3swp_A2e-53114515157NAC domain-containing protein 19
3swp_B2e-53114515157NAC domain-containing protein 19
3swp_C2e-53114515157NAC domain-containing protein 19
3swp_D2e-53114515157NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in a few sieve element cells before enucleation and in phloem-pole pericycle cells. {ECO:0000269|PubMed:25081480}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC086, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00205DAPTransfer from AT1G54330Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Regulated by the transcription factor APL (AC Q9SAK5). {ECO:0000269|PubMed:25081480}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8471980.0KC847198.1 Gossypium hirsutum NAC domain protein NAC21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001313743.10.0NAC domain-containing protein 86-like
RefseqXP_012465563.10.0PREDICTED: NAC domain-containing protein 86-like
SwissprotA4VCM01e-77NAC45_ARATH; NAC domain-containing protein 45
TrEMBLA0A0D2SE400.0A0A0D2SE40_GOSRA; Uncharacterized protein
STRINGGorai.013G146300.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54330.11e-103NAC domain containing protein 20
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]