PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G118000.1
Common NameB456_013G118000, LOC105784245
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 328aa    MW: 36980.5 Da    PI: 5.4494
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G118000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM182.31.2e-56171441129
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lppGfrFhPtdee++++yL +kv ++++++  +i e+d++k+ePwdLp k+k +ekewyfF++rd+ky+tg r+nrat++gyWkatgkdke
  Gorai.013G118000.1  17 LPPGFRFHPTDEEIITHYLLEKVMNSNFSA-AAIGEADLNKSEPWDLPDKAKMGEKEWYFFCQRDRKYPTGMRTNRATQAGYWKATGKDKE 106
                         79*************************999.78***************99999************************************** PP

                 NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                         +++ kg lvg+kktLvfykgrap+gekt+Wvmheyrle
  Gorai.013G118000.1 107 IFKGKGCLVGMKKTLVFYKGRAPRGEKTNWVMHEYRLE 144
                         ***9********************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.45E-6512169IPR003441NAC domain
PROSITE profilePS5100560.41317168IPR003441NAC domain
PfamPF023654.1E-3018143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MEDAIVVNQR HQELMELPPG FRFHPTDEEI ITHYLLEKVM NSNFSAAAIG EADLNKSEPW  60
DLPDKAKMGE KEWYFFCQRD RKYPTGMRTN RATQAGYWKA TGKDKEIFKG KGCLVGMKKT  120
LVFYKGRAPR GEKTNWVMHE YRLEGKFSYY NLPKAAKDEW VVCRVFHKNT AGINKSPIAM  180
ASLGDEFMDY ASLPPLMDPT FDCESEFKAI NKTPVSSSIF NPQIPTQDPV FFHPETSDSG  240
TGSLRTEDEA SIRALAGNYS GDHIGQRQCN KVEQFSSNQS MVSPSQDTGH STEINNNEIS  300
SVISKSFGLG SIDPYDDIED LACLWNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-541517215169NO APICAL MERISTEM PROTEIN
1ut4_B2e-541517215169NO APICAL MERISTEM PROTEIN
1ut7_A2e-541517215169NO APICAL MERISTEM PROTEIN
1ut7_B2e-541517215169NO APICAL MERISTEM PROTEIN
3swm_A2e-541517218172NAC domain-containing protein 19
3swm_B2e-541517218172NAC domain-containing protein 19
3swm_C2e-541517218172NAC domain-containing protein 19
3swm_D2e-541517218172NAC domain-containing protein 19
3swp_A2e-541517218172NAC domain-containing protein 19
3swp_B2e-541517218172NAC domain-containing protein 19
3swp_C2e-541517218172NAC domain-containing protein 19
3swp_D2e-541517218172NAC domain-containing protein 19
4dul_A2e-541517215169NAC domain-containing protein 19
4dul_B2e-541517215169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU7063400.0EU706340.1 Gossypium hirsutum NAC domain protein NAC6 (NAC6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012465518.10.0PREDICTED: NAC domain-containing protein 100
SwissprotQ9FK441e-119NAC87_ARATH; NAC domain-containing protein 87
TrEMBLA0A0D2TZN70.0A0A0D2TZN7_GOSRA; Uncharacterized protein
TrEMBLA0A2P5QPY60.0A0A2P5QPY6_GOSBA; Uncharacterized protein
STRINGGorai.013G118000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22692775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.21e-121Arabidopsis NAC domain containing protein 87
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]