PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G081100.1
Common NameB456_013G081100, LOC105784248
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 438aa    MW: 48339.3 Da    PI: 6.6549
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G081100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.32.2e-10151192546
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 
                         k  rr+++NReAAr+sR+RKka++++Le     L++  ++L+
  Gorai.013G081100.1 151 KTLRRLAQNREAARKSRLRKKAYVQQLESSQLRLTQLEQELQ 192
                         788*************************98777777766665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.1E-7147218IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.358149193IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.81E-7151195No hitNo description
CDDcd147085.17E-23151203No hitNo description
PfamPF001704.9E-7151193IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1707.7E-8152196No hitNo description
PROSITE patternPS000360154169IPR004827Basic-leucine zipper domain
PfamPF141448.0E-29236309IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MQSFKAAAPH TTPDMFCHSS FFLRGDDDFN PANAFHHDDS VDLSSSSIFS LKSSNVDVVG  60
NSLHYDAFST GIRAAEIVSS GTGCLDTGQF MYQKGTTLGN GHIENWGDSG LADNSQQTDT  120
STDVDTDDKN QLQHGAIITV DQSKLKTGDQ KTLRRLAQNR EAARKSRLRK KAYVQQLESS  180
QLRLTQLEQE LQKARQQGFF IASGLSGGHG LSVSGNAALA FDMDYAHWLN EHQRLINDLR  240
SGLNSHLGDS ELRILVESVM AHYDEVFKLK SIGVKADAFH MLSGMWKTPA ERCFMWLGGF  300
RSSELLKILG NHLEPLTDQQ LMGICNLQQS SQQAEDALSQ GMEALQQALV DTLPSACLGP  360
TACGNVADYM SQMAIAMSKL ATLENFLHQA DLLRHQTLQQ MHRILTTRQA ARALLVFSDY  420
NSRLRALSSL WLARPRN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012465526.10.0PREDICTED: transcription factor HBP-1b(c38)-like isoform X5
SwissprotQ9SX271e-179PAN_ARATH; Transcription factor PERIANTHIA
TrEMBLA0A0D2SAK10.0A0A0D2SAK1_G
STRINGPOPTR_0008s11710.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66728133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68640.11e-144bZIP family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]