PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G063500.2
Common NameB456_013G063500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 167aa    MW: 19004.4 Da    PI: 9.2361
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G063500.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM119.62.8e-37101331128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         +ppGfrFhPtdeelvv++L++k++  +++  +vi+++++y ++Pw+L+ k+ +e k+wy++s+r++        nr t++gyWka g +++
  Gorai.013G063500.2  10 VPPGFRFHPTDEELVVHFLQRKAALLPCHP-DVIPDLHLYPYDPWELDGKALGEGKQWYYYSRRSE--------NRNTRNGYWKAMGMEES 91 
                         69*************************999.99**************977778899******9865........788999*********** PP

                 NAM  92 vlsk.kgelvglkktLvfykgrapkge....ktdWvmheyrl 128
                         v+++ +++ vg+kk Lvf+ g+a++g     ktdW+mheyrl
  Gorai.013G063500.2  92 VVNRsSSRRVGIKKYLVFFIGEAEEGGgggvKTDWIMHEYRL 133
                         *99867788**********998888644444*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.15E-448140IPR003441NAC domain
PROSITE profilePS5100541.50810162IPR003441NAC domain
PfamPF023653.1E-2411133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MGDNNSINKV PPGFRFHPTD EELVVHFLQR KAALLPCHPD VIPDLHLYPY DPWELDGKAL  60
GEGKQWYYYS RRSENRNTRN GYWKAMGMEE SVVNRSSSRR VGIKKYLVFF IGEAEEGGGG  120
GVKTDWIMHE YRLSDSDSSS GTSRSSKRRG HNSKIVSILL YTILHL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-351014417153NO APICAL MERISTEM PROTEIN
1ut4_B6e-351014417153NO APICAL MERISTEM PROTEIN
1ut7_A6e-351014417153NO APICAL MERISTEM PROTEIN
1ut7_B6e-351014417153NO APICAL MERISTEM PROTEIN
3swm_A7e-351014420156NAC domain-containing protein 19
3swm_B7e-351014420156NAC domain-containing protein 19
3swm_C7e-351014420156NAC domain-containing protein 19
3swm_D7e-351014420156NAC domain-containing protein 19
3swp_A7e-351014420156NAC domain-containing protein 19
3swp_B7e-351014420156NAC domain-containing protein 19
3swp_C7e-351014420156NAC domain-containing protein 19
3swp_D7e-351014420156NAC domain-containing protein 19
4dul_A6e-351014417153NAC domain-containing protein 19
4dul_B6e-351014417153NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in root xylem vessels (PubMed:15923329). Expressed in stems, vascular tissue of cauline leaves and tracheary elements of sepals (PubMed:18069942). {ECO:0000269|PubMed:15923329, ECO:0000269|PubMed:18069942}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012461186.11e-113PREDICTED: NAC domain-containing protein 68-like
SwissprotQ8GWK67e-57NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A0D2S9E41e-120A0A0D2S9E4_GOSRA; Uncharacterized protein
STRINGGorai.013G063500.11e-112(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.12e-51xylem NAC domain 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  3. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]