PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G035200.1
Common NameB456_013G035200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 139aa    MW: 15948.2 Da    PI: 8.7511
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G035200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.32.5e-115195549
                        CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49
                        ++ +rk++NRe+ArrsR RKk+ ++ L+ +  +L + N++ +  l
  Gorai.013G035200.1 51 RKRKRKASNRESARRSRMRKKKHLDDLTAELTQLREDNHQIILSL 95
                        6789**********************************9877554 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.5E-1447111IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.8E-1049126No hitNo description
PROSITE profilePS5021710.2084991IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.13E-1151102No hitNo description
PfamPF001709.2E-95192IPR004827Basic-leucine zipper domain
CDDcd147023.54E-1552102No hitNo description
PROSITE patternPS0003605469IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MSQILSETFL SGFMILVQSL SVVFLYCGTS SGASTVTQVS EELQALLMEE RKRKRKASNR  60
ESARRSRMRK KKHLDDLTAE LTQLREDNHQ IILSLNITSQ SYLHVEAENS VLRAQTNELS  120
CRLQSLEDII TFLQWKQW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15055RKRKRK
25371KRKASNRESARRSRMRKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012461770.14e-75PREDICTED: ocs element-binding factor 1-like
SwissprotQ9LZP84e-23BZP53_ARATH; bZIP transcription factor 53
TrEMBLA0A0D2S7S33e-96A0A0D2S7S3_G
STRINGGLYMA04G01210.15e-37(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50128154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.18e-36basic leucine-zipper 44
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]