PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G023300.1
Common NameB456_013G023300, LOC105781092
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 164aa    MW: 18346.9 Da    PI: 8.1573
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G023300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.00134264123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C+ C++ F++   L  H  +H
  Gorai.013G023300.1 42 FECKTCNRQFNSFQALGGHRASH 64
                        89**********99999998887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.87E-940111No hitNo description
PfamPF139127.9E-134166IPR007087Zinc finger, C2H2
SMARTSM003550.214264IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.0764269IPR007087Zinc finger, C2H2
PROSITE patternPS0002804464IPR007087Zinc finger, C2H2
PfamPF139126.2E-1088113IPR007087Zinc finger, C2H2
SMARTSM003550.589111IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.45289113IPR007087Zinc finger, C2H2
PROSITE patternPS00028091111IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MKRSFLNREE NNLALANCLM LLSQGGHQYE HPEIDSNPSR VFECKTCNRQ FNSFQALGGH  60
RASHKKPRLV EVDSEMSENQ ASPAKPKTHE CSICGLEFAI GQALGGHMRR HRGVLSENQH  120
EEPIVKKSNS RRVLCLDLNL TPLENDLELF KLGKGAPTIN FLL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012461124.11e-118PREDICTED: zinc finger protein ZAT11-like
TrEMBLA0A0D2W2441e-118A0A0D2W244_G
STRINGPOPTR_0010s21650.12e-64(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.17e-36C2H2 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]