PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G004400.2
Common NameB456_013G004400
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 326aa    MW: 36541.9 Da    PI: 8.3804
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G004400.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.96.1e-10131171545
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                         k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  Gorai.013G004400.2 131 KILRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 171
                         6679************************9777777666555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.1E-7127190IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.289129173IPR004827Basic-leucine zipper domain
CDDcd147081.13E-25131183No hitNo description
PfamPF001706.1E-7131171IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.44E-7131174No hitNo description
Gene3DG3DSA:1.20.5.1709.5E-8133176No hitNo description
PROSITE patternPS000360134149IPR004827Basic-leucine zipper domain
PfamPF141441.2E-31213285IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MANLYLGFTC GNADSAFNSA KASGQPFPTD RSYIGTLDKT PNSFTINPSA LRVESQGLHL  60
ERGQQTGPVS ISRGHTENWG ESDMADASPR TDISTDAETD EKNLRFDSEK LNAAVAASDS  120
SDRSKSNLDQ KILRRLAQNR EAARKSRLRK KAYVQQLESS RLKLTQLEQE LQRARQQGIF  180
ISSSGDQSHS LGGNGAMTFD VEYGRWLEEH NRQINELRMA VNSHAGDAEL RIIVDGVMAH  240
YDEIFRLKSN VAKADVFHLL SGMWKTPAER CFLWLGGFRS SELLKSNSWW ELATCNNLPS  300
RLKMHYHKVW KHCSSLCPRH CPLDP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012463061.10.0PREDICTED: transcription factor TGA2-like isoform X1
RefseqXP_012463062.10.0PREDICTED: transcription factor TGA2-like isoform X1
RefseqXP_012463063.10.0PREDICTED: transcription factor TGA2-like isoform X1
RefseqXP_012463064.10.0PREDICTED: transcription factor TGA2-like isoform X1
RefseqXP_012463065.10.0PREDICTED: transcription factor TGA2-like isoform X1
SwissprotQ391401e-114TGA6_ARATH; Transcription factor TGA6
TrEMBLA0A0D2V8W00.0A0A0D2V8W0_G
STRINGVIT_13s0084g00660.t011e-141(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-96TGACG motif-binding factor 6
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]