PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G001700.2
Common NameB456_013G001700, LOC105782814
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 333aa    MW: 37151.8 Da    PI: 9.8646
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G001700.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.95.9e-104586445
                        XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1  4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45
                         k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  Gorai.013G001700.2 45 QKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 86
                        6889*************************9777777666555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1706.2E-83689No hitNo description
SMARTSM003384.6E-942105IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.4154488IPR004827Basic-leucine zipper domain
PfamPF001704.9E-74686IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.44E-74689No hitNo description
PROSITE patternPS0003604964IPR004827Basic-leucine zipper domain
PfamPF141442.1E-31129203IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MADASPRTDT STDDTDEKNQ RFGRGQMNAI VASDSSDRSK DKTDQKTLRR LAQNREAARK  60
SRLRKKAYVQ QLESSRLKLT QLEQELQRAR QQGIFISSSG DQSHSMSGNG ALAFDVEYAR  120
WLEEHNRKIN ELRTAVNSHA GDAELRIIVD SVTTHFDDIF RLKGTAAKAD VFHILSGMWK  180
TPAERCFLWI GGFRSSELLK LLANQLEPLT EQQFMGIQKL QQSSQQAEDS LSQGMEALQQ  240
SLAETLANGS PSAPSGSSGN VANYMGQMAM AMGKLGTLEG FLLQADNLRQ QTLQQMHRIL  300
TTRQSARALL AINDYFSRLR ALSSLWLARP RE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.8530.0seedling
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO487474020.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012463272.10.0PREDICTED: transcription factor HBP-1b(c38)-like
RefseqXP_012463270.10.0PREDICTED: transcription factor HBP-1b(c38)-like
RefseqXP_012463269.10.0PREDICTED: transcription factor HBP-1b(c38)-like
RefseqXP_012463268.10.0PREDICTED: transcription factor HBP-1b(c38)-like
SwissprotQ415580.0HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLA0A0D2V7F40.0A0A0D2V7F4_G
STRINGGLYMA15G37220.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06950.41e-134bZIP family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]