PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.012G125500.2
Common NameB456_012G125500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 183aa    MW: 20723.1 Da    PI: 9.7149
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.012G125500.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.51.9e-51141381128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lppGfrFhPtdeelvv+yL++kv + +l++ ++i+evd++k++PwdLp      e+e yfFs+r+ ky++ +r+nrat sgyWkatg dk+
  Gorai.012G125500.2  14 LPPGFRFHPTDEELVVQYLRRKVLACPLPA-SIIPEVDVCKADPWDLPGD---LEQERYFFSTREAKYPNTNRSNRATISGYWKATGIDKQ 100
                         79****************************.89***************54...46799********************************* PP

                 NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++++ ++++vg+kktLvfy+g+ap+g +tdW+mheyr+
  Gorai.012G125500.2 101 IVTSrSNQAVGMKKTLVFYRGKAPNGCRTDWIMHEYRV 138
                         999857778***************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-558147IPR003441NAC domain
PROSITE profilePS5100553.31914165IPR003441NAC domain
PfamPF023653.8E-2715138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MEKLSFVKNG VLRLPPGFRF HPTDEELVVQ YLRRKVLACP LPASIIPEVD VCKADPWDLP  60
GDLEQERYFF STREAKYPNT NRSNRATISG YWKATGIDKQ IVTSRSNQAV GMKKTLVFYR  120
GKAPNGCRTD WIMHEYRVVS TETAACNAPP NKKNQTQVNC HITLLLSLCL YVLVKAKSLI  180
LY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-471213915143NO APICAL MERISTEM PROTEIN
1ut4_B4e-471213915143NO APICAL MERISTEM PROTEIN
1ut7_A4e-471213915143NO APICAL MERISTEM PROTEIN
1ut7_B4e-471213915143NO APICAL MERISTEM PROTEIN
4dul_A4e-471213915143NAC domain-containing protein 19
4dul_B4e-471213915143NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Up-regulated during xylem vessel element differentiation. {ECO:0000269|PubMed:20388856}.
UniprotTISSUE SPECIFICITY: Expressed in xylem and phloem cells in roots and inflorescence stems (PubMed:20388856). Highly expressed in senescent leaves. Expressed in roots, and abscission and dehiscence tissues, such as axils of bracts and abscission zones in cauline leaves and siliques (PubMed:21673078). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472290.0KC847229.1 Gossypium hirsutum NAC domain protein NAC52 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001313796.11e-116NAC domain-containing protein 83
RefseqXP_012459997.11e-116PREDICTED: NAC transcription factor 25
SwissprotQ9FY931e-83NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A0D2VYQ01e-134A0A0D2VYQ0_GOSRA; Uncharacterized protein
STRINGGorai.012G125500.11e-115(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.18e-86NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]