PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.012G083700.1
Common NameB456_012G083700, LOC105780919
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 207aa    MW: 23364.7 Da    PI: 8.9112
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.012G083700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM102.74.8e-3231191128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         +p GfrFhPtdeelvv+yLk+k+ + +l++ +vi+e+d++ ++Pw+Lp +v   +++ yfFs+r +            + gyWk  gk+k+
  Gorai.012G083700.1   3 MPIGFRFHPTDEELVVHYLKRKALSLPLPA-SVISEFDVLGTHPWSLPGEV---NEKRYFFSSRGRDGG--------GSGGYWKPIGKEKP 81 
                         699***************************.99***************554...4578*****988654........368*********** PP

                 NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++++ ++e+vg+++ L+f   + ++ ++t+W++h+yrl
  Gorai.012G083700.1  82 IIETgSNEVVGMRRALIFCGRKPSNHTNTRWFLHQYRL 119
                         **9967778**********77888899*********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-392144IPR003441NAC domain
PROSITE profilePS5100539.63144IPR003441NAC domain
PfamPF023659.6E-204119IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MKMPIGFRFH PTDEELVVHY LKRKALSLPL PASVISEFDV LGTHPWSLPG EVNEKRYFFS  60
SRGRDGGGSG GYWKPIGKEK PIIETGSNEV VGMRRALIFC GRKPSNHTNT RWFLHQYRLL  120
HFNSTQMVKG EMDGDWLVFQ VFQRKRKARK HAAKMATCID FTAEDCPVFY PPPPPTSPSS  180
SEITEVSPNG LDEEESSSFI TSCIRN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-24115018174NAC domain-containing protein 19
3swm_B2e-24115018174NAC domain-containing protein 19
3swm_C2e-24115018174NAC domain-containing protein 19
3swm_D2e-24115018174NAC domain-containing protein 19
3swp_A2e-24115018174NAC domain-containing protein 19
3swp_B2e-24115018174NAC domain-containing protein 19
3swp_C2e-24115018174NAC domain-containing protein 19
3swp_D2e-24115018174NAC domain-containing protein 19
3ulx_A2e-24115013174Stress-induced transcription factor NAC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142149QRKRKARK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472370.0KC847237.1 Gossypium hirsutum NAC domain protein NAC60 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012460910.11e-154PREDICTED: NAC transcription factor ONAC010-like
TrEMBLA0A0D2TKW71e-153A0A0D2TKW7_GOSRA; Uncharacterized protein
STRINGGorai.012G083700.11e-154(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78742541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-36NAC domain containing protein 83
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]