PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.012G081200.1
Common NameB456_012G081200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 258aa    MW: 28482.8 Da    PI: 6.3818
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.012G081200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_127.95e-09103145850
                         HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   8 rrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 
                         rr   NReA r++R++Kka ++ Lee+vk+L   N++L  +l+
  Gorai.012G081200.1 103 RRSLGNREAVRKYREKKKAHTAYLEEEVKKLRLLNQQLVRKLQ 145
                         78889*********************************98887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.5E-699163IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.4E-10101162No hitNo description
SuperFamilySSF579591.63E-7102146No hitNo description
PfamPF077162.9E-12103145IPR004827Basic-leucine zipper domain
CDDcd146861.48E-11108154No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MLYSYCLSGQ ENMEDGEIEL SDHVLLSNTA PSTNFQDSTS VDLIIDEYLK NTRTCSHTHT  60
CNPPGPDVAH SHTCYHTHTQ LLTSEDDDYH NNKASSGLNL KPRRSLGNRE AVRKYREKKK  120
AHTAYLEEEV KKLRLLNQQL VRKLQGQTIL EAEVLRLRSL LVGIRAKVDS ELGVFPFHKQ  180
CANATILKEG DCGVQSIGDT ISLQCQTDLP CFHPHPGSLS SHASIGGSEK VSISLEGNCQ  240
PATVNCQANE HNSDDQC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012459164.10.0PREDICTED: uncharacterized protein LOC105779789
RefseqXP_012459165.10.0PREDICTED: uncharacterized protein LOC105779789
RefseqXP_012459166.10.0PREDICTED: uncharacterized protein LOC105779789
TrEMBLA0A0D2RZM30.0A0A0D2RZM3_G
STRINGPOPTR_0001s05750.14e-85(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20362879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35040.12e-51bZIP family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]