PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G291500.1
Common NameB456_011G291500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 169aa    MW: 18918 Da    PI: 9.5803
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G291500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260129.61.3e-40111101100
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                         +CaaCk+l+r+C++ C++apyf +++pkkfa vhk+FGasnv+k+l ++pee+red+++slvyeAear+rdPvyG++g i  lq+++ +l+
  Gorai.011G291500.1  11 SCAACKLLKRRCSPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILIEVPEEQREDTVNSLVYEAEARLRDPVYGCIGAIALLQRKMIELQ 101
                         6****************************************************************************************** PP

              DUF260  92 aelallkee 100
                         ++lal++++
  Gorai.011G291500.1 102 HDLALARAR 110
                         ****99875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.44410111IPR004883Lateral organ boundaries, LOB
PfamPF031955.9E-4011108IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MRSHEPRSTS SCAACKLLKR RCSPTCIFAP YFRSDEPKKF AKVHKVFGAS NVSKILIEVP  60
EEQREDTVNS LVYEAEARLR DPVYGCIGAI ALLQRKMIEL QHDLALARAR LARYAANYST  120
GVAGTELDRL TVTGLGMKLR ICYNIYIISG DEGRKKFLEG QKIILQSY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012457487.11e-115PREDICTED: LOB domain-containing protein 21-like isoform X2
SwissprotQ9SRL89e-65LBD21_ARATH; LOB domain-containing protein 21
TrEMBLA0A0D2RUE21e-122A0A0D2RUE2_G
STRINGVIT_13s0067g01450.t015e-74(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102552735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11090.12e-61LOB domain-containing protein 21
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]