PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G087700.2
Common NameB456_011G087700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 187aa    MW: 21230 Da    PI: 9.8421
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G087700.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM59.79.6e-1937556128
                 NAM  56 kewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++ yfFs+r+ +y + ++ +ra+ sgyWk  gk+k++l++ ++++vg+++ L+f + + ++g++t+W++h+yrl
  Gorai.011G087700.2   3 ESKYFFSTRHDSYIN-NKCKRAAGSGYWKPIGKEKPILASgTNRVVGMRRALIFCQRKCSNGTQTRWLLHQYRL 75 
                         456**********86.6889999***************9967788***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100525.7361105IPR003441NAC domain
SuperFamilySSF1019413.92E-194104IPR003441NAC domain
PfamPF023651.7E-8575IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MKESKYFFST RHDSYINNKC KRAAGSGYWK PIGKEKPILA SGTNRVVGMR RALIFCQRKC  60
SNGTQTRWLL HQYRLVDPVP TLDSTQRSRS EMCGPDWLVF RVFQRKRSRR GKKHEVVSHK  120
SETSSAMNMP SCIDFTVEES SVFGPPPQPT SPSSTEITEV SSHGLDQEES SAFITSYYSN  180
CCMRNQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-15610874168NO APICAL MERISTEM PROTEIN
1ut4_B1e-15610874168NO APICAL MERISTEM PROTEIN
1ut7_A1e-15610874168NO APICAL MERISTEM PROTEIN
1ut7_B1e-15610874168NO APICAL MERISTEM PROTEIN
3swm_A1e-15610877171NAC domain-containing protein 19
3swm_B1e-15610877171NAC domain-containing protein 19
3swm_C1e-15610877171NAC domain-containing protein 19
3swm_D1e-15610877171NAC domain-containing protein 19
3swp_A1e-15610877171NAC domain-containing protein 19
3swp_B1e-15610877171NAC domain-containing protein 19
3swp_C1e-15610877171NAC domain-containing protein 19
3swp_D1e-15610877171NAC domain-containing protein 19
4dul_A1e-15610874168NAC domain-containing protein 19
4dul_B1e-15610874168NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103109QRKRSRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012457098.11e-137PREDICTED: NAC domain-containing protein 18-like
TrEMBLA0A0D2T4N11e-137A0A0D2T4N1_GOSRA; Uncharacterized protein
STRINGGorai.011G087700.11e-137(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.21e-20NAC domain containing protein 41
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]