PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G087700.1
Common NameB456_011G087700, LOC105778062
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 249aa    MW: 28244.2 Da    PI: 9.0865
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G087700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM121.38.8e-38141371128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         +p GfrFhPtdeelvv+yLk+k+   +l++ +vi+e+d+++++Pw++p  +   +++ yfFs+r+ +y + ++ +ra+ sgyWk  gk+k+
  Gorai.011G087700.1  14 MPIGFRFHPTDEELVVHYLKRKALCLPLPA-SVIPEFDVFQTDPWSMPGDM---KESKYFFSTRHDSYIN-NKCKRAAGSGYWKPIGKEKP 99 
                         699***************************.99***************554...4577**********86.6889999************* PP

                 NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +l++ ++++vg+++ L+f + + ++g++t+W++h+yrl
  Gorai.011G087700.1 100 ILASgTNRVVGMRRALIFCQRKCSNGTQTRWLLHQYRL 137
                         **9967788***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-4010166IPR003441NAC domain
PROSITE profilePS5100543.12814167IPR003441NAC domain
PfamPF023654.0E-2115137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MESQNFVVNG GVKMPIGFRF HPTDEELVVH YLKRKALCLP LPASVIPEFD VFQTDPWSMP  60
GDMKESKYFF STRHDSYINN KCKRAAGSGY WKPIGKEKPI LASGTNRVVG MRRALIFCQR  120
KCSNGTQTRW LLHQYRLVDP VPTLDSTQRS RSEMCGPDWL VFRVFQRKRS RRGKKHEVVS  180
HKSETSSAMN MPSCIDFTVE ESSVFGPPPQ PTSPSSTEIT EVSSHGLDQE ESSAFITSYY  240
SNCCMRNQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-331217015168NO APICAL MERISTEM PROTEIN
1ut4_B5e-331217015168NO APICAL MERISTEM PROTEIN
1ut7_A5e-331217015168NO APICAL MERISTEM PROTEIN
1ut7_B5e-331217015168NO APICAL MERISTEM PROTEIN
4dul_A5e-331217015168NAC domain-containing protein 19
4dul_B5e-331217015168NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165171QRKRSRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5893852e-71JX589385.1 Gossypium hirsutum clone NBRI_GE24075 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012457098.10.0PREDICTED: NAC domain-containing protein 18-like
TrEMBLA0A0D2UPU70.0A0A0D2UPU7_GOSRA; Uncharacterized protein
STRINGGorai.011G087700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18062786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.12e-52NAC domain containing protein 83
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]