PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G076900.1
Common NameB456_011G076900, LOC105775789
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 401aa    MW: 45702 Da    PI: 4.3255
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G076900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix55.31.7e-17166250286
            trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrer.gferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         Wt++e+l+L++a  +   + +r++l+   W+ev++k++e  ++er+ +qC+++++ l+k+ykk+k++  + t +++s+++yf++++
  Gorai.011G076900.1 166 WTEHETLVLLDAWGDCFLQCGRKSLRTEEWQEVAEKVSEIsKIERTETQCRNRLDTLKKKYKKEKAMLTE-TGGTTSKWVYFKKMD 250
                         *************************************775278**************************9.689999********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.4E-21165252No hitNo description
Gene3DG3DSA:1.10.10.603.6E-4166231IPR009057Homeodomain-like
PROSITE profilePS500906.191166223IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MDDIEDDARY PPNPFGVSYQ QGYGSSNRQK LPLRNIPSSR PIRNQYVDDD EDGEDEVEDL  60
GEEEETLNRS NGVRYVGKGM DDDNEDDDDD DEDDDLLDDD DDEDDYNEGG DDRKNVVANL  120
GRHPKKRKLK SLVSSYEFAP RVPAPAVSAP SVLKSSYGGR NSLTDWTEHE TLVLLDAWGD  180
CFLQCGRKSL RTEEWQEVAE KVSEISKIER TETQCRNRLD TLKKKYKKEK AMLTETGGTT  240
SKWVYFKKMD MLMSTPPQQG RLSCGFDSGE YVFMNPRVYL NRANGLDEMR DSPANSEFAD  300
SEEDVSDGLP PKKRRFGRQS GEDSSVKLLA DSIQKFSDIY EKIENSKRQQ MLELEKMRMD  360
FHRELEMQKR QIMERAQAEI AELQHGENEA NDASGENASG *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.7320.0seedling
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012453753.10.0PREDICTED: trihelix transcription factor ASIL2-like
TrEMBLA0A0D2RIK10.0A0A0D2RIK1_GOSRA; Uncharacterized protein
STRINGGorai.011G076900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15605916
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.17e-68Trihelix family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]