PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G057600.4
Common NameB456_011G057600
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NF-YA
Protein Properties Length: 225aa    MW: 24867.3 Da    PI: 9.4004
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G057600.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.21.2e-3276132158
           CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                         dep+YVNaKQyq+Il+RRq Rakle+++kl +k rkpylheSRh hAl+R+Rg+gGrF
  Gorai.011G057600.4  76 DEPIYVNAKQYQAILRRRQYRAKLEAQNKL-IKVRKPYLHESRHLHALKRARGNGGRF 132
                         79****************************.**************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005216.8E-3774135IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.09675135IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.3E-2677132IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.8E-2378100IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS00686080100IPR018362CCAAT-binding factor, conserved site
PRINTSPR006163.8E-23109132IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MLTCVISLLL HQNPQGGNEM HGKLVGDHTK LAAPMGTLEC VLPPSQVDYS KSNIHHQLTM  60
AMLPARVPLP LELTQDEPIY VNAKQYQAIL RRRQYRAKLE AQNKLIKVRK PYLHESRHLH  120
ALKRARGNGG RFLNTKKLQE SKGITTSNGL DTCFSKSEVH QLENYKDAAS TASCSDVTTA  180
SNSDEIFQQP DFRFSTYSSH IGGPMPGHTG DMQGGGNLHH RLCG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A5e-2176136262NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:9662544}.
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012454938.11e-157PREDICTED: nuclear transcription factor Y subunit A-3-like isoform X2
SwissprotQ93ZH28e-56NFYA3_ARATH; Nuclear transcription factor Y subunit A-3
TrEMBLA0A0D2UPJ21e-167A0A0D2UPJ2_GOSRA; Uncharacterized protein
STRINGGorai.011G057600.11e-150(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.13e-58nuclear factor Y, subunit A3
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]