PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G050400.6
Common NameB456_011G050400
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 273aa    MW: 30962.4 Da    PI: 8.5783
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G050400.6genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix51.33e-1623118286
            trihelix   2 WtkqevlaLiearr.emeerlrrg........klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr..tsessstcpy 81 
                         Wt +e+++Liea++ + e+r++r+        k  + +W++v ++++ +g+ rs++qC++kw+nl ++ykk++e ++k   ++++ s+ + 
  Gorai.011G050400.6  23 WTVNETMVLIEAKEmDYERRMKRSgdhsegrnKPTELRWKWVEDYCWGKGCLRSQNQCNDKWDNLMRDYKKVREYQRKVaeREGNDSKQRS 113
                         *************963333333322222222268899**************************************9998433556667777 PP

            trihelix  82 fdqle 86 
                         + ++e
  Gorai.011G050400.6 114 YWEME 118
                         77776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.8761588IPR017877Myb-like domain
PfamPF138371.8E-1222118No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MHLMMDDQGG NNAVTREYRK GNWTVNETMV LIEAKEMDYE RRMKRSGDHS EGRNKPTELR  60
WKWVEDYCWG KGCLRSQNQC NDKWDNLMRD YKKVREYQRK VAEREGNDSK QRSYWEMEKN  120
ERKEKSLPSN MLRQIYERLE EVVEKKGAQT VAATAGGGGG SDPNITNLPY VMDRPMVSTF  180
QPSLPPLLQH QLSAPIPAAI PLPLPQASPQ LPPPPAPIIQ PPPLSYAQPL PTIGRCVMIA  240
QILIQVSIQT HQQREGEEVV AMAKAPVGLQ TT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012457270.11e-177PREDICTED: protein enabled homolog isoform X1
RefseqXP_012457271.11e-177PREDICTED: protein enabled homolog isoform X1
RefseqXP_012457272.11e-177PREDICTED: protein enabled homolog isoform X1
TrEMBLA0A0D2UP630.0A0A0D2UP63_GOSRA; Uncharacterized protein
STRINGGorai.011G050400.11e-176(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.18e-62Trihelix family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]