PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G050400.3
Common NameB456_011G050400, LOC105778174
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 236aa    MW: 26959.7 Da    PI: 8.4284
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G050400.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix51.52.6e-1623118286
            trihelix   2 WtkqevlaLiearr.emeerlrrg........klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr..tsessstcpy 81 
                         Wt +e+++Liea++ + e+r++r+        k  + +W++v ++++ +g+ rs++qC++kw+nl ++ykk++e ++k   ++++ s+ + 
  Gorai.011G050400.3  23 WTVNETMVLIEAKEmDYERRMKRSgdhsegrnKPTELRWKWVEDYCWGKGCLRSQNQCNDKWDNLMRDYKKVREYQRKVaeREGNDSKQRS 113
                         *************963333333322222222268899**************************************9998433556667777 PP

            trihelix  82 fdqle 86 
                         + ++e
  Gorai.011G050400.3 114 YWEME 118
                         77776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.8761588IPR017877Myb-like domain
PfamPF138371.2E-1222118No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MHLMMDDQGG NNAVTREYRK GNWTVNETMV LIEAKEMDYE RRMKRSGDHS EGRNKPTELR  60
WKWVEDYCWG KGCLRSQNQC NDKWDNLMRD YKKVREYQRK VAEREGNDSK QRSYWEMEKN  120
ERKEKSLPSN MLRQIYERLE EVVEKKGAQT VAATAGGGGG SDPNITNLPY VMDRPMVSTF  180
QPSLPPLLQH QLSAPIPAAI PLPLPQASPQ LPPPPAPIIQ PPPLSYAQPL PTIDV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012457273.11e-176PREDICTED: uncharacterized protein LOC105778174 isoform X2
TrEMBLA0A0D2VIB61e-175A0A0D2VIB6_GOSRA; Uncharacterized protein
STRINGGorai.011G050400.11e-175(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.11e-61Trihelix family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]