PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G039600.2
Common NameB456_011G039600
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 214aa    MW: 23781.1 Da    PI: 10.6354
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G039600.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix52.71.1e-1632123187
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         +W+++ + +L++a  ++  +l+rg+l++++W++v++++     + ++ +r+ +qCk++++ ++k+yk +k++ ++ + + +s++p+f++l+
  Gorai.011G039600.2  32 CWSEEATSTLVDAWGRRYVELNRGNLRQKDWQDVADAVnalhgHTKKTHRTDVQCKNRIDTIKKKYKIEKTRVSSSNGTLTSSWPFFERLD 122
                         7****************************************99999**************************9999888899*******98 PP

            trihelix  87 a 87 
                         a
  Gorai.011G039600.2 123 A 123
                         5 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.9E-2730124No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MADLTDSVMQ SAVITPPSTT PNTRTLPVRE DCWSEEATST LVDAWGRRYV ELNRGNLRQK  60
DWQDVADAVN ALHGHTKKTH RTDVQCKNRI DTIKKKYKIE KTRVSSSNGT LTSSWPFFER  120
LDALIGSNFA AKKLSTSPKI SPKPSPRLSP RIPGSPPVAL PLLLPYRRTP PAPTAIVALP  180
QKRPAVDDGY FKRNYSGRDE EIGKSSRKVW SSV*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00413DAPTransfer from AT3G58630Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012455238.11e-133PREDICTED: trihelix transcription factor ASIL2-like
RefseqXP_016711272.11e-133PREDICTED: trihelix transcription factor ASIL2-like
TrEMBLA0A0D2VHU71e-154A0A0D2VHU7_GOSRA; Uncharacterized protein
STRINGGorai.011G039600.11e-133(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.12e-43sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]