PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G232200.1
Common NameB456_010G232200, LOC105772161
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 156aa    MW: 17821.6 Da    PI: 8.1538
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G232200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601162.3e-3616111296
              DUF260   2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                         C aCk++rr+C++dC +ap fp++++++f+n+hklFG++nv+kl+++l +++++++am+++v e+++rardPv G++++i++lq+q+e+++
  Gorai.010G232200.1  16 CLACKYQRRRCPADCSFAPNFPHDREQQFKNMHKLFGMANVIKLIRTLkDPSKKDIAMRTIVVESDMRARDPVGGCYRIIQELQHQIECKE 106
                         9***********************************************667779************************************* PP

              DUF260  92 aelal 96 
                         a+l++
  Gorai.010G232200.1 107 AQLDK 111
                         *9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.33814116IPR004883Lateral organ boundaries, LOB
PfamPF031956.9E-3516111IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MSISTSGNTT VATEDCLACK YQRRRCPADC SFAPNFPHDR EQQFKNMHKL FGMANVIKLI  60
RTLKDPSKKD IAMRTIVVES DMRARDPVGG CYRIIQELQH QIECKEAQLD KIYYTIANCR  120
AQNAHCLQLQ TQKIDDGDHC QMMHKLPLIG FETEK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-2281134108LOB family transfactor Ramosa2.1
5ly0_B3e-2281134108LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012448927.11e-114PREDICTED: LOB domain-containing protein 22-like
SwissprotQ9LRW11e-33LBD22_ARATH; LOB domain-containing protein 22
TrEMBLA0A0D2RCG41e-113A0A0D2RCG4_GOSRA; Uncharacterized protein
STRINGGorai.010G232200.11e-114(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3659222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.15e-36LOB domain-containing protein 22
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]