PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G230500.1
Common NameB456_010G230500, LOC105774456
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 318aa    MW: 34625.2 Da    PI: 6.3702
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G230500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.18.6e-17212246135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C +C + kTp+WR gp g+ktLCnaCG++y++ +l
  Gorai.010G230500.1 212 CLHCASEKTPQWRTGPMGPKTLCNACGVRYKSGRL 246
                         99*****************************9885 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169924.2E-7723300IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011412.215206242IPR000679Zinc finger, GATA-type
SMARTSM004019.8E-16206256IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.28E-14208269No hitNo description
Gene3DG3DSA:3.30.50.101.1E-13208243IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.70E-13211258No hitNo description
PROSITE patternPS003440212237IPR000679Zinc finger, GATA-type
PfamPF003201.1E-14212246IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MEMGDLFVGG YYGGGATGDF SPEKRMSMVE EKLGENFIVD DLLDFSNEDA VIGDGLLFDN  60
VAGNSTDLST VTCNSSVSGG ENHFSSANFT HSSQFSGELG VPYDELAELE WLSNFVEDSF  120
STVPNLQSNH QIFALPTPES SSSSTRSDSL PRSSTDPIFQ HGAPLPGKAR SKRSMTAPCD  180
WSTRVLHLNP KPTGHKNRDN PNGNTEYSGR KCLHCASEKT PQWRTGPMGP KTLCNACGVR  240
YKSGRLVPEY RPASSPTFVS TEHSNSHRKV LEIRRQKDMQ RGGQGTRFLS QTSVFPISNG  300
GDVADDFLIH HHGGPRF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012452410.10.0PREDICTED: GATA transcription factor 4-like
TrEMBLA0A0D2VE650.0A0A0D2VE65_G
STRINGGLYMA07G01960.21e-117(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56822749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.11e-71GATA transcription factor 9
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]