PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G171500.1
Common NameB456_010G171500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 347aa    MW: 38700.8 Da    PI: 8.5764
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G171500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix55.81.2e-1727118286
            trihelix   2 WtkqevlaLiearremeerlr........rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                         Wt +e+++Liea++ ++er          rgk  + +W++v +++++rg+ rs++qC++kw+nl ++ykk++e +++ t++++ +   + +
  Gorai.010G171500.1  27 WTVSETMVLIEAKKMDDERRMkkswegegRGKPTELRWKWVEDYCWRRGCLRSQNQCNDKWDNLMRDYKKVREYQRR-TAGAEDNQGSYWE 116
                         **************66666552222222246799*****************************************98.5777778888888 PP

            trihelix  85 le 86 
                         +e
  Gorai.010G171500.1 117 ME 118
                         87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.0621991IPR017877Myb-like domain
PfamPF138377.8E-1326118No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MGVAGTLTMA DQGGNNIGMR EYRKGNWTVS ETMVLIEAKK MDDERRMKKS WEGEGRGKPT  60
ELRWKWVEDY CWRRGCLRSQ NQCNDKWDNL MRDYKKVREY QRRTAGAEDN QGSYWEMEKN  120
ERKEKNLPTN MLRQIYECLE EVVEKKGGQR VVLPATATAS GSLPIPNIPD VMDRPIASVQ  180
LPPILQHQLP PIPAAVPLPL TALPQLPQPA AAPTPLLQPP FSYAQPLPTV DSDTSEYSDS  240
LAKRRRRSGG NWEGTSSGAA TANNSNEAGT AISKSASIIA EAIQASEENE ERRHRDLVSL  300
HERILKIEES KTEINKRGID GLVDAINKLA NSILAFASHK NQSAPK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5899023e-68JX589902.1 Gossypium hirsutum clone NBRI_GE24692 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012452807.10.0PREDICTED: uncharacterized protein LOC105774776
TrEMBLA0A0D2VBL50.0A0A0D2VBL5_GOSRA; Uncharacterized protein
STRINGGorai.010G171500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34932662
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.17e-75Trihelix family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]