PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G124200.3
Common NameB456_010G124200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 215aa    MW: 24105.7 Da    PI: 4.2007
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G124200.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_137.84.1e-12161194336
                         XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvk 36 
                          lkr rrk +NRe+ArrsR+RK+++++eLe  v 
  Gorai.010G124200.3 161 HLKRLRRKLSNRESARRSRKRKQEQLAELEFQVT 194
                         58****************************8776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1706.2E-9157194No hitNo description
PfamPF001709.6E-10161195IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.048161196IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.46E-8162196No hitNo description
CDDcd147029.81E-12164195No hitNo description
PROSITE patternPS000360166181IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MKRSASELAL EEFSRNTMST TTIPAPSAFP DFALHPPIAH LSNSFHFTEF SGDAAELSPQ  60
THVLLSQTLT SHLDSQSSFC GNESWGSTVC EGNNSNYRSR ENEVRGATTL SSDHDPSDDD  120
DDDVEEEEDD DDDEDEEGGE GEGEVEEADA GQSEQSLDPS HLKRLRRKLS NRESARRSRK  180
RKQEQLAELE FQVTTIYSYY FCKPYRSTIL NYFS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161168LKRLRRKL
2165181RRKLSNRESARRSRKRK
3175181RRSRKRK
4175182RRSRKRKQ
5177182SRKRKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9641831e-115JX964183.1 Gossypium hirsutum clone NBRI_TRANS-452 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012451878.11e-137PREDICTED: basic leucine zipper 9
TrEMBLA0A0D2V9E31e-157A0A0D2V9E3_G
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.11e-12basic leucine zipper 9
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]