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Plant Transcription
Factor Database
v4.0
Previous version: v1.0,
v2.0,
v3.0
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Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.010G113000.1 | ||||||||
Common Name | B456_010G113000, LOC105772909 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | WRKY | ||||||||
Protein Properties | Length: 497aa MW: 53812.5 Da PI: 6.3556 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 79.4 | 3.8e-25 | 184 | 240 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +DgynWrKYGqK+vk+ + +rsYY+Ct+++C++kk +e+s++ ++v+e++++g H h+ Gorai.010G113000.1 184 SDGYNWRKYGQKQVKSPKGSRSYYKCTFSDCQAKK-IECSDDTGHVIEVVNKGMHSHK 240 8********************************98.*********************7 PP | |||||||
2 | WRKY | 98.3 | 4.9e-31 | 359 | 415 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 Dgy+WrKYGqK+vkg+++pr+YYrCtsagCpv+k++e++ +++++++itY+g H+h+ Gorai.010G113000.1 359 DGYRWRKYGQKMVKGNPNPRNYYRCTSAGCPVRKHIETAVDNTNAIIITYKGVHDHD 415 9*******************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.7E-20 | 179 | 242 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.76E-20 | 181 | 242 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.3E-23 | 183 | 241 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 16.386 | 184 | 242 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.2E-17 | 185 | 240 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.3E-31 | 342 | 417 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.904 | 352 | 417 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.5E-27 | 353 | 417 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.6E-35 | 357 | 416 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.6E-23 | 359 | 414 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 497 aa Download sequence Send to blast |
MAETESQALP TKRHHHHQND DSEGQEDDDE EEEEEDGLEN EEEEEGASRV GESQGAGAAP 60 PSDDAGLKHS QLDTLPNDDP PDGLQVNSTS ESKEGSEFKE KVNIADQEVS PSLAVLSAEA 120 PTSLSQQAPT SVTQGISSAP TPTLQEQSLS VQKVNGASVP KANQQKSYNL KMVSVVPIVK 180 TPVSDGYNWR KYGQKQVKSP KGSRSYYKCT FSDCQAKKIE CSDDTGHVIE VVNKGMHSHK 240 PPRKNNFTRE SKIVSSAARA SHNIQPIRIF NDSDPSTSSK ESVPETTVNP ERKGLFSCGS 300 DGNGDVQVKE ELTSEPETKK RQAFLMKKGN TVCSDSVLKA RKKPRFVVHA AGDVGISGDG 360 YRWRKYGQKM VKGNPNPRNY YRCTSAGCPV RKHIETAVDN TNAIIITYKG VHDHDMPVPK 420 KRHGQPIAPL VAAAAPASMN NLQHKKTEGG QSQVTSTQWS VGTEGELTGE ALDLGGEKAI 480 ESARTLLSIG FEIKPC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-26 | 345 | 417 | 2 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF669768 | 0.0 | KF669768.1 Gossypium hirsutum WRKY transcription factor 82 (WRKY82) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012449854.1 | 0.0 | PREDICTED: probable WRKY transcription factor 32 isoform X1 | ||||
Swissprot | P59583 | 1e-133 | WRK32_ARATH; Probable WRKY transcription factor 32 | ||||
TrEMBL | A0A0D2SR03 | 0.0 | A0A0D2SR03_G | ||||
STRING | VIT_11s0037g00150.t01 | 1e-174 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6338 | 28 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30935.1 | 1e-126 | WRKY DNA-binding protein 32 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.010G113000.1 |
Entrez Gene | 105772909 |
Publications ? help Back to Top | |||
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