PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G086300.2
Common NameB456_010G086300
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NF-YA
Protein Properties Length: 246aa    MW: 26478.8 Da    PI: 9.4236
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G086300.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA100.51.6e-3195151158
           CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                         d p+YVNaKQy++Il+RR  Rakle+++kl  ksrkpylheSRh hA++R RgsgGrF
  Gorai.010G086300.2  95 DGPVYVNAKQYHGILRRRRYRAKLEAQNKL-VKSRKPYLHESRHLHAVNRVRGSGGRF 151
                         57****************************.**************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.6E-3493154IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.00494154IPR001289Nuclear transcription factor Y subunit A
PfamPF020455.7E-2797151IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006164.7E-2397119IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS00686099119IPR018362CCAAT-binding factor, conserved site
PRINTSPR006164.7E-23128151IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MLFLHIQASQ DPIGQDESCG KDIEGQMKPI NNPNTVFSPS NPNYNLSMAS AQYPYADVCI  60
GGLFTPYGQP AIIQAQMAGG SAPARLPLPL DLAEDGPVYV NAKQYHGILR RRRYRAKLEA  120
QNKLVKSRKP YLHESRHLHA VNRVRGSGGR FLSKKKLQQP HHPTSNPSSR SISDASCLDR  180
KNSGSELESH LHGGGCSSSS TSCSDISSAS NNNGSFQLRK HGFMDISPGV SSMCNGLQNC  240
ASVGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-2195161268NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016682438.11e-177PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X3
TrEMBLA0A0D2V7I21e-180A0A0D2V7I2_GOSRA; Uncharacterized protein
STRINGGorai.010G086300.11e-160(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.26e-36nuclear factor Y, subunit A7
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]