PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G025100.1
Common NameB456_010G025100, LOC105773158
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 205aa    MW: 21908.8 Da    PI: 4.9851
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G025100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26089.15.7e-282104198
              DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                         +C++C+vlr++C++ Cvl+  +     +++q +++ +++k+FG+s +l+l++++pe++r+++++sl++eA+ r+ +Pv+Gavg++++++++
  Gorai.010G025100.1   2 SCNGCRVLRKGCSETCVLRSSLrwiesAEAQGNATLFLAKFFGRSDLLSLISSVPESQRPALFQSLLFEACGRTVNPVNGAVGLLSSGNWH 92 
                         6*********************9999777889*********************************************************** PP

              DUF260  87 leqlkaelallk 98 
                         ++q++ e++l++
  Gorai.010G025100.1  93 ICQAALETVLQG 104
                         ****99988765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.4561107IPR004883Lateral organ boundaries, LOB
PfamPF031959.2E-242100IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSETCVLR SSLRWIESAE AQGNATLFLA KFFGRSDLLS LISSVPESQR  60
PALFQSLLFE ACGRTVNPVN GAVGLLSSGN WHICQAALET VLQGGALRPI SAGSWTPSCD  120
ESSDRFCVNS CNFESKPLTT SMMMTGNQSV LTAPSDLSLS VTAKLGGEMR NKTVSFYSEE  180
SEITTLGSNG NEETQDTKIL NLFV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012450312.11e-148PREDICTED: LOB domain-containing protein 39-like
SwissprotQ9SZE83e-69LBD39_ARATH; LOB domain-containing protein 39
TrEMBLA0A0D2U7Q11e-148A0A0D2U7Q1_G
STRINGPOPTR_0014s01770.14e-74(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82128122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.12e-70LOB domain-containing protein 39
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]