PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G405400.4
Common NameB456_009G405400, LOC105766700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 589aa    MW: 64419.4 Da    PI: 8.227
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G405400.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_121.84.2e-07238299162
                         XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                         eke +r rr   NRe+Ar   +R++a +e+L+ kv  L++eN+ Lk   e   ke+++ +s 
  Gorai.009G405400.4 238 EKEARRLRRILANRESARQTIRRRQALCEKLTLKVTDLTQENENLKRAKELALKEYQSQDST 299
                         799*******************************************6655556777766665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.4E-4235292No hitNo description
SMARTSM003382.0E-7238302IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.577240303IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.82E-5242294No hitNo description
CDDcd147025.00E-13243294No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 589 aa     Download sequence    Send to blast
MELGRGFLSS SCASPTADAA KDALAADRMD MEAAEILAAL AHSKKRLAVS VSAEFGAKWG  60
CKGSRLRKRA STSTESPPSG VGSNPVQSGS DLAEDQATIG QEQSQVMSTS VVIESVVAES  120
LNGSHPSAER YPSDGVVRSS QNVTKAEKET CRLHRMLTRK ESDWQMIHER PILFSTVGIP  180
EKDIWEDSPL NEMTGNNALI KPVKTEQNAE SVRSSPAGAI KHMSGGGGRS RQNLTEAEKE  240
ARRLRRILAN RESARQTIRR RQALCEKLTL KVTDLTQENE NLKRAKELAL KEYQSQDSTN  300
KHLKAEMAKA LKADEGKTTA ELLDHHISGP SGNYPYFFYN QHHFLPFCWP SSVQSSHPVQ  360
SQCGQNAIFV PSSISSPANG RLDSSFNQEN PINVNGPKTA LYVVPYPWVF SLPDQRSGLH  420
PQPSCGTKDI EDETSVSNHF NAGCHLKPVM NEKYNSSLPV EVEKEANDPI EASPNNKNCT  480
SVRLPADVGV QCMSHIKEEV LVPGPLCSAG TTFENRTDHV VKTEEAPIGA FHFVGALPEE  540
NKESKNYTSK KVLDAVAAAE ARKRRKELTK LKNLHGRHRS PLSLSAKI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1561566RKRRKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012441720.10.0PREDICTED: uncharacterized protein LOC105766700 isoform X2
TrEMBLA0A0D2TZP60.0A0A0D2TZP6_G
STRINGPOPTR_0006s11550.15e-91(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19490.11e-43bZIP family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]