PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G405400.3
Common NameB456_009G405400, LOC105766700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 590aa    MW: 64547.5 Da    PI: 8.227
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G405400.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_121.84.2e-07239300162
                         XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                         eke +r rr   NRe+Ar   +R++a +e+L+ kv  L++eN+ Lk   e   ke+++ +s 
  Gorai.009G405400.3 239 EKEARRLRRILANRESARQTIRRRQALCEKLTLKVTDLTQENENLKRAKELALKEYQSQDST 300
                         799*******************************************6655556777766665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.4E-4236293No hitNo description
SMARTSM003382.0E-7239303IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.577241304IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.82E-5243295No hitNo description
CDDcd147025.32E-13244295No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MELGRGFLSS SCASPTADAA KDALAADRMD MEAAEILAAL AHSKKRLAVS VSAEFGAKWG  60
CKGSRLRKRA STSTESPPSG VGSNPVQSGS DLAEQDQATI GQEQSQVMST SVVIESVVAE  120
SLNGSHPSAE RYPSDGVVRS SQNVTKAEKE TCRLHRMLTR KESDWQMIHE RPILFSTVGI  180
PEKDIWEDSP LNEMTGNNAL IKPVKTEQNA ESVRSSPAGA IKHMSGGGGR SRQNLTEAEK  240
EARRLRRILA NRESARQTIR RRQALCEKLT LKVTDLTQEN ENLKRAKELA LKEYQSQDST  300
NKHLKAEMAK ALKADEGKTT AELLDHHISG PSGNYPYFFY NQHHFLPFCW PSSVQSSHPV  360
QSQCGQNAIF VPSSISSPAN GRLDSSFNQE NPINVNGPKT ALYVVPYPWV FSLPDQRSGL  420
HPQPSCGTKD IEDETSVSNH FNAGCHLKPV MNEKYNSSLP VEVEKEANDP IEASPNNKNC  480
TSVRLPADVG VQCMSHIKEE VLVPGPLCSA GTTFENRTDH VVKTEEAPIG AFHFVGALPE  540
ENKESKNYTS KKVLDAVAAA EARKRRKELT KLKNLHGRHR SPLSLSAKI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1562567RKRRKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012441719.10.0PREDICTED: uncharacterized protein LOC105766700 isoform X1
TrEMBLA0A0D2V0F60.0A0A0D2V0F6_G
STRINGPOPTR_0006s11550.15e-91(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19490.12e-43bZIP family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]