PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G405400.2
Common NameB456_009G405400
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 604aa    MW: 66255.6 Da    PI: 8.7117
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G405400.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_121.74.3e-07253314162
                         XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                         eke +r rr   NRe+Ar   +R++a +e+L+ kv  L++eN+ Lk   e   ke+++ +s 
  Gorai.009G405400.2 253 EKEARRLRRILANRESARQTIRRRQALCEKLTLKVTDLTQENENLKRAKELALKEYQSQDST 314
                         799*******************************************6655556777766665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.5E-4250307No hitNo description
SMARTSM003382.0E-7253317IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.577255318IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.98E-5257309No hitNo description
CDDcd147026.30E-13258309No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
LRYILKAPQR LVRDLFLLGR GFLSSSCASP TADAAKDALA ADRMDMEAAE ILAALAHSKK  60
RLAVSVSAEF GAKWGCKGSR LRKRASTSTE SPPSGVGSNP VQSGSDLAED QATIGQEQSQ  120
VMSTSVVIES VVAESLNGSH PSAERYPSDG VVRSSQNVTK AEKETCRLHR MLTRKESDWQ  180
MIHERPILFS TVGIPEKDIW EDSPLNEMTG NNALIKPVKT EQNAESVRSS PAGAIKHMSG  240
GGGRSRQNLT EAEKEARRLR RILANRESAR QTIRRRQALC EKLTLKVTDL TQENENLKRA  300
KELALKEYQS QDSTNKHLKA EMAKALKADE GKTTAELLDH HISGPSGNYP YFFYNQHHFL  360
PFCWPSSVQS SHPVQSQCGQ NAIFVPSSIS SPANGRLDSS FNQENPINVN GPKTALYVVP  420
YPWVFSLPDQ RSGLHPQPSC GTKDIEDETS VSNHFNAGCH LKPVMNEKYN SSLPVEVEKE  480
ANDPIEASPN NKNCTSVRLP ADVGVQCMSH IKEEVLVPGP LCSAGTTFEN RTDHVVKTEE  540
APIGAFHFVG ALPEENKESK NYTSKKVLDA VAAAEARKRR KELTKLKNLH GRHRSPLSLS  600
AKI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1576581RKRRKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012441720.10.0PREDICTED: uncharacterized protein LOC105766700 isoform X2
TrEMBLA0A0D2U2L90.0A0A0D2U2L9_G
STRINGPOPTR_0006s11550.18e-91(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19490.12e-43bZIP family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]