PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G405400.1
Common NameB456_009G405400
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 605aa    MW: 66383.8 Da    PI: 8.7117
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G405400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_121.74.3e-07254315162
                         XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                         eke +r rr   NRe+Ar   +R++a +e+L+ kv  L++eN+ Lk   e   ke+++ +s 
  Gorai.009G405400.1 254 EKEARRLRRILANRESARQTIRRRQALCEKLTLKVTDLTQENENLKRAKELALKEYQSQDST 315
                         799*******************************************6655556777766665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.5E-4251308No hitNo description
SMARTSM003382.0E-7254318IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.577256319IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.98E-5258310No hitNo description
CDDcd147026.96E-13259310No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    Send to blast
LRYILKAPQR LVRDLFLLGR GFLSSSCASP TADAAKDALA ADRMDMEAAE ILAALAHSKK  60
RLAVSVSAEF GAKWGCKGSR LRKRASTSTE SPPSGVGSNP VQSGSDLAEQ DQATIGQEQS  120
QVMSTSVVIE SVVAESLNGS HPSAERYPSD GVVRSSQNVT KAEKETCRLH RMLTRKESDW  180
QMIHERPILF STVGIPEKDI WEDSPLNEMT GNNALIKPVK TEQNAESVRS SPAGAIKHMS  240
GGGGRSRQNL TEAEKEARRL RRILANRESA RQTIRRRQAL CEKLTLKVTD LTQENENLKR  300
AKELALKEYQ SQDSTNKHLK AEMAKALKAD EGKTTAELLD HHISGPSGNY PYFFYNQHHF  360
LPFCWPSSVQ SSHPVQSQCG QNAIFVPSSI SSPANGRLDS SFNQENPINV NGPKTALYVV  420
PYPWVFSLPD QRSGLHPQPS CGTKDIEDET SVSNHFNAGC HLKPVMNEKY NSSLPVEVEK  480
EANDPIEASP NNKNCTSVRL PADVGVQCMS HIKEEVLVPG PLCSAGTTFE NRTDHVVKTE  540
EAPIGAFHFV GALPEENKES KNYTSKKVLD AVAAAEARKR RKELTKLKNL HGRHRSPLSL  600
SAKI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1577582RKRRKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012441719.10.0PREDICTED: uncharacterized protein LOC105766700 isoform X1
TrEMBLA0A0D2QW370.0A0A0D2QW37_G
STRINGPOPTR_0006s11550.19e-91(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112112428
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19490.12e-43bZIP family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]